Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01401 ATGCCAACCCAAACTTTCTTTAGCAGAGTTTCCAGAGTTTTCCACGACCATCCTTCCGTTTCCAGGCTCCTCGTTATTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATATGCCGATGCTGGCCCAACCAATGGTGTACCCAGTATCGCATCTACAGCCAATTTAGATGAGAAGAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCATTCACTCCATTATTGCCAAGTGTTACTTGTGGTACAGTTGAAGCCCGTAGCATTGTTGAGCCAATTCGCAACCTTGTGAGGAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAGTGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGCCGATCTAACGAAAACAACAACCTGAATGGCAAAAAGGAATTTGTTGTTGACTATGACTACCTAGTGATTGCTGTGGGAGCACAAGTTAATACATTCAATACCCCTGGCGTTGTAGAGAATTGCCATTTCTTGAAGAACTACGTAGTAATGGAAGTAGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCTTGGATGAAGAAGATAGAAAGAAAATACTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAATGAGGACTTGGTCAAATTATATCCTGGACTACAGGAATTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACAGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACTGTGTGGTCAACTGGTATCGGAACCCGTCCAATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACTGATGAGTGGCTACGAGTTGAGGGATGTGACAATGTATATGCACTTGGTGACTGTGCTACTATAAATCAACGAAAAGTCATGGAGGATATTTCAGCCATATTTAGTAAGGCAGACAAAGACAATTCCGGAACACTTACAGTAAAAGAATTCCAAGAAGTCATTGATGACATATGTGAAAGATATCCTCAGGTGGAGCTATATTTAAAGAATAAGCAGATGCACAACATTGTTGATCTTTTAAAAGGATCCAAAGAGGATGTGGCAAAGGAGTCTATCGAATTAGACATTGAAGAGTTTAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACTGCACAGGTGGCTGCGCAACAAGGTGCATATCTTGCCCACTGTTTTAACCGTATGGAAGAGTGCGAAAAGTATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGACGCCACCGCTTTCGGCCCTTTCGGAATGGTACAAATCTGATTTGCTCACTGTGTACGATCGTCCTTGAAGGTACAAACATCTTGGACAATTTGCACCATTGGGCGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGTACAAGAGCACTGGTGGTTACGGATTGGACAAGGCGATTTATTTTTGGGAGAGATTCAAGTCGCATATGAATCAATTGAGACTGTGGAGTTGGTCTTGGTGCTTGCGTTTGATGATCAACTTAGTGAGCTTTCGTTCAAATGGTTCCTGCGGCTTAAGATATGTGTTATAATGGGAGAATCTTATTCTGAAAAGAACACAATTAGATAA 1956 41.72 MPTQTFFSRVSRVFHDHPSVSRLLVIVTVSGGSLVAYADAGPTNGVPSIASTANLDEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNLVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKNYVVMEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLQEFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRKVMEDISAIFSKADKDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMHNIVDLLKGSKEDVAKESIELDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECEKYPEGPLRFRGSGRHRFRPFRNGTNLICSLCTIVLEGTNILDNLHHWAENKRLHNFLGIGCPLATALSGSGTLSMQVSKLVGVQEHWWLRIGQGDLFLGEIQVAYESIETVELVLVLAFDDQLSELSFKWFLRLKICVIMGESYSEKNTIR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21873153 21878726 + MELO3C002555.2.1 Cme12g01401 344618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01401 651 ProSitePatterns EF-hand calcium-binding domain. 400 412 IPR018247 -
Cme12g01401 651 SUPERFAMILY FAD/NAD(P)-binding domain 222 384 IPR036188 -
Cme12g01401 651 SUPERFAMILY EF-hand 380 475 IPR011992 -
Cme12g01401 651 SUPERFAMILY FAD/NAD(P)-binding domain 59 283 IPR036188 -
Cme12g01401 651 PANTHER NADH DEHYDROGENASE 3 522 IPR045024 GO:0003954|GO:0006116
Cme12g01401 651 ProSiteProfiles EF-hand calcium-binding domain profile. 387 422 IPR002048 GO:0005509
Cme12g01401 651 SMART efh_1 391 419 IPR002048 GO:0005509
Cme12g01401 651 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 390 IPR023753 GO:0016491
Cme12g01401 651 Gene3D - 50 419 - -
Cme12g01401 651 Gene3D - 431 524 - -
Cme12g01401 651 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Cme12g01401 651 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
Cme12g01401 651 PRINTS FAD-dependent pyridine nucleotide reductase signature 231 249 - -
Cme12g01401 651 PANTHER NAD(P)H DEHYDROGENASE B2 3 522 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01831 Cme-Chr8:21703032 Cme12g01401 Cme-Chr12:21873153 1.59E-10 dispersed
Cme11g01086 Cme-Chr11:16008141 Cme12g01401 Cme-Chr12:21873153 0 dispersed
Cme11g01389 Cme-Chr11:20660970 Cme12g01401 Cme-Chr12:21873153 1.49E-63 dispersed
Cme01g00362 Cme-Chr1:2659948 Cme12g01401 Cme-Chr12:21873153 0 wgd
Cme12g01401 Cme-Chr12:21873153 Cme08g00332 Cme-Chr8:2110295 3.77E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01401 K03885 - csv:101204145 1018.07