Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01411 ATGAAAAAAACAAGACATGAAATTTCTTTTCTTCTCCTTCTGTCATTGACATGTTTCTCTTCAAGAATTTGCTACGGGGGAGATACAATTACATCAACAAATTTCATCAAAGACCCTGGAACTATTATATCCAGTAACAGTGTCTTCAAATTGGGGTTCTTCACACCTTCAAATTCTACCCATCGATATGTAGGAATTTGGTTTGAGAAGATTTCTCCACAAACTGTTGTCTGGGTTGCGAACAGAGACACCCCTCTGAATAATACTTCTGGGATTTTCACTATTTCTAACGATGGAAATCTTGTGGTTTTAGATTCAGCAAATATCATCCTTTGGTCTTCAAATATTTCTTCTTCTTCTTCAGCAGCCAACAACACAATCGCTCAAATTTTAGATACAGGAAACTTGGTTTTGAAAGATACTTCTTCAGGGGTGATTATATGGGAAAGTTTCGACCACCCATCTGATAAATTCTTGATTCCCATGAAGCTTATGACCAACAAAAGAACAAACGAGCACGTTGGTTTAACCTCGTGGAACTCCCCTTCCAATCCATCTACAGGTAATTTCACATTTTTGTTGGATGTTCGTAATATTCCTGAAGCTGTGGTTTTGAATGGTGGTAAAACTTATTGGCGATCTGGTCCATGGAATGGTCAGTCATTTATTGGAATACCTGAAATGTATTCTGTTTATCTCTCTGGGTATAGCCTTTCAATCCAAAATCAAACTTACACTCTTTCTGTTGCTACAAATATTGAAAGTCAACAAATCGTTTGTTTGTTCATAAGCTCACAAGGGAATTTTGAGCAAAGGAACTGGGATGACGAGAAGAAGCAATGGAATACTAGTTGGGTTTCTCCAAAAACAGAGTGTGATTTCTATGGAACTTGTGGGGCCTTTGGAATTTGTAATGCAAAAACATCCCCTGTTTGTAGCTGTTTAACAGGGTTTAAGCCAAAGCAGGAAAAGGAATGGAATCAAGGAAATTGGAGTAGTGGGTGTGTGAGAAAAACGACATTAAAATGTGAAAATCAGTTGAACAACAACACTGATGCTAAAGAAGATGGGTTTTTAAAATTGGGAATGGTTAAAGTTCCATTCTTTGCAGAGTGGTCTAATGCCCCAGTTTCAATTGATGATTGTAGACTCAAGTGCTTGAGAAATTGCTCGTGTAGTTCATATGCATTTGAAAATGGCATTTGTATGCATTGGATAAATGACTTGATTGATATACAACAGTTTGATGGCGTTGGAGCTAATCTTTACCTTCGAATCGCATCCGCAGATTTGCCAACAAATAGCGTAAGAAACAAGAAAGGAATTATTATAGCCATAGTGATACCAGTAACGCTTGTCATCTTCATCATTGCCATATTCTTATGTTGGAAAAGGAAGATTAACAGACAAGAGAAGAAGCTAAATATGACAGCTAGTGAGAAAAAGAAGATTTTGAAACAAACAATAGGAGATGATATTATGATTGAGGATGAAATCAAACTTAAGGAGCTACCACTTTATGATTTTGAGAAGGTAGCAATTGCAACAAATTACTTTGATTTGAATAACAAGCTTGGGCAGGGTGGCTTTGGTCCAGTGTATAAGGGGAAATTATTAAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCTTCTAAACAAGGGTATGAAGAATTTATCAATGAAGTGAGGGTGATTTCAAAGCTACAGCACAGGAATCTTGTAAGACTTTTGGGTTGCTGCATTGAAGGAGAAGAGAAGATGTTAATATATGAGTATATGCCCAACCTAAGTTTGGATGCATGGATCTTTGGCTCTCCCAGACATAAAAGTCTGGATTGGAGAAAAAGGTTTAATATTATTGATGGAATTGCTCGTGGTCTTCTTTACCTTCATAGAGATTCAAGATTGAAAATTATTCATAGAGATCTTAAGGTAAGTAATATTTTGTTAGATAAAGATTTGAACCCTAAGATTTCGGATTTTGGTATGGCAAGAATATTTGGTGGTGATGAAGTTCAAGCAAACACCGTAAGAGTTGTTGGAACTTATGGATATATGTCTCCTGAATACGCAATGCAAGGTCAATTTTCGGAGAAATCAGATGTGTTTAGCTTTGGAGTTTTGTTACTTGAAATTATTAGTGGGAGAAGAAATACAGGATTCTACCTCCATGAATCTAGCATAAGCTTATTGGGATTTGCATGGAAATTGTGGACAGAAGACAATCTTATTCCTTTGATCGAACCAACAATATATGAACCGTGCTATCAACTAGAGATTTCGAGATGCATTCATGTGGGACTGTTATGTGTTCAAGAATTTATAAACGAACGGCCAAACGTTTCCACAATCATTTCAATGCTTAACAGTGAGATTGTTGATCTTCCTTCTCCGAAGGAACCTGGCTTTGTTGGTAGACCACATGAAACTGACACAGAATCTTCTCAAAAAAATTTAGATCAGTGTTCTACAAATAATGTTACACTTACAGCAGTTATAGCACGATAA 2514 36.63 MKKTRHEISFLLLLSLTCFSSRICYGGDTITSTNFIKDPGTIISSNSVFKLGFFTPSNSTHRYVGIWFEKISPQTVVWVANRDTPLNNTSGIFTISNDGNLVVLDSANIILWSSNISSSSSAANNTIAQILDTGNLVLKDTSSGVIIWESFDHPSDKFLIPMKLMTNKRTNEHVGLTSWNSPSNPSTGNFTFLLDVRNIPEAVVLNGGKTYWRSGPWNGQSFIGIPEMYSVYLSGYSLSIQNQTYTLSVATNIESQQIVCLFISSQGNFEQRNWDDEKKQWNTSWVSPKTECDFYGTCGAFGICNAKTSPVCSCLTGFKPKQEKEWNQGNWSSGCVRKTTLKCENQLNNNTDAKEDGFLKLGMVKVPFFAEWSNAPVSIDDCRLKCLRNCSCSSYAFENGICMHWINDLIDIQQFDGVGANLYLRIASADLPTNSVRNKKGIIIAIVIPVTLVIFIIAIFLCWKRKINRQEKKLNMTASEKKKILKQTIGDDIMIEDEIKLKELPLYDFEKVAIATNYFDLNNKLGQGGFGPVYKGKLLNGQEIAVKRLSRASKQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAWIFGSPRHKSLDWRKRFNIIDGIARGLLYLHRDSRLKIIHRDLKVSNILLDKDLNPKISDFGMARIFGGDEVQANTVRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTGFYLHESSISLLGFAWKLWTEDNLIPLIEPTIYEPCYQLEISRCIHVGLLCVQEFINERPNVSTIISMLNSEIVDLPSPKEPGFVGRPHETDTESSQKNLDQCSTNNVTLTAVIAR 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21964354 21968038 - MELO3C002543.2.1 Cme12g01411 344628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01411 837 Pfam D-mannose binding lectin 75 179 IPR001480 -
Cme12g01411 837 Pfam PAN-like domain 353 412 IPR003609 -
Cme12g01411 837 SMART ntp_6 353 426 IPR003609 -
Cme12g01411 837 CDD PAN_AP_plant 346 427 - -
Cme12g01411 837 ProSiteProfiles PAN/Apple domain profile. 343 427 IPR003609 -
Cme12g01411 837 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544
Cme12g01411 837 CDD STKc_IRAK 525 791 - -
Cme12g01411 837 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 10 827 - -
Cme12g01411 837 Pfam Protein tyrosine and serine/threonine kinase 521 788 IPR001245 GO:0004672|GO:0006468
Cme12g01411 837 Gene3D Phosphorylase Kinase; domain 1 494 594 - -
Cme12g01411 837 CDD B_lectin 33 154 IPR001480 -
Cme12g01411 837 SMART blect_4 33 154 IPR001480 -
Cme12g01411 837 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 219 IPR036426 -
Cme12g01411 837 Gene3D - 23 151 IPR036426 -
Cme12g01411 837 Pfam Domain of unknown function (DUF3403) 792 837 IPR021820 GO:0004674
Cme12g01411 837 SUPERFAMILY Protein kinase-like (PK-like) 503 790 IPR011009 -
Cme12g01411 837 ProSiteProfiles Protein kinase domain profile. 519 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01411 837 Gene3D Transferase(Phosphotransferase) domain 1 595 797 - -
Cme12g01411 837 SMART serkin_6 519 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01411 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Cme12g01411 837 ProSiteProfiles Zinc finger SWIM-type profile. 375 413 IPR007527 GO:0008270
Cme12g01411 837 PIRSF SRK 1 837 IPR024171 GO:0004674
Cme12g01411 837 ProSiteProfiles Bulb-type lectin domain profile. 27 151 IPR001480 -
Cme12g01411 837 PANTHER - 10 827 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00383 Cme-Chr1:2780613 Cme12g01411 Cme-Chr12:21964354 4.90E-64 dispersed
Cme12g01411 Cme-Chr12:21964354 Cme12g01417 Cme-Chr12:22003631 0 dispersed
Cme12g01873 Cme-Chr12:24926920 Cme12g01411 Cme-Chr12:21964354 1.07E-114 dispersed
Cme12g01409 Cme-Chr12:21947518 Cme12g01411 Cme-Chr12:21964354 7.60E-179 proximal
Cme12g01411 Cme-Chr12:21964354 Cme12g01412 Cme-Chr12:21968776 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65318 PF07714 PK_Tyr_Ser-Thr 2.30E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01411 - - csv:101215940 1503.42