Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01412 ATGAATTCCGCCTTTCCTCTTCTTCTTCTTCTTTCTTTAGTTACATTCTTCTCTTCAAACTTCTGCTTTGGCAGTACCGATACAATCACCTCAACAGATTTCATCAAACACCCTTCAACCATAATTTCCAATGCCGATTCCTTCGAATTGGGCTGGTTCTCACCTCCTAATTCCACAGCACAATACGTCGGAATTTGGTACCATCAAATTTCCATACAAACTCTAGTATGGGTTGCTAACAAAGACACCCCTCTCAACAATACTTCCGGAATTTTCACCATCTCCAACGATGGAAATCTTGTGGTCTTAGACGAATACAACACCATCATTTGGTCTTCAAATATTACTTCACCCACAGCCAATACAACCGCTCGAATTCTGGATTCAGGCAACCTTGTCTTGGAAGATCCTGTTTCCGGGGTTTTTATTTGGGAGAGCTTCCAACACCCTTCCAATTTACTCTTGCCTTCCATGAAACTTATCACAAACAAGAGAACTCAACAGAAGCTCCAATATACCTCATGGAAAACCCCTTCCGATCCATCTAAAGGTAACTTTTCTTTAGCGTTGGATGTTATTAATATTCCTGAAGCTGTTGTTTGGAATAACAATGGAGGTAGCCCATATTGGAGATCTGGTCCATGGAATGGTCAGAGTTTTATCGGCTTCCCCAATATGATATCTGTTTATCACATTGGATTTAGTCTTATGATTGAAGATCAAACTTATTCTTTCTCAATTTTTTACAATAGCAACTTACTTTACAACATGGTATTAAGTCCAGAAGGGATTTTGGAGCAACAGTTCTGGAATGAATCGAAGGGAAATTGGGAAGTGAGTTGGTCGGCTTTTAGAACAGAATGTGATTATTACGGTGTTTGTGGGGCGTTTGGGGTATGTAATGCAGAAGCAACCCCTGTTTGCAGCTGTTTAACAGGGTTTAAACCGAAGGTGGAAGATGAATGGAAACGAGGAAATTGGAGTAATGGGTGTGTGAGAATTACGCCATTGCAATGTGAGAGCAGCGCTAGAAACAACAGTAGAGCTGAGGAAGATGGATTTCTGAAATTGGAAATGGTTAAAGTTCCATTTTTGGTAGAGTGGTCGAATTCGTCTACTTCAGGAAGTGATTGCAAACAAGAGTGCTTTGAGAATTGCTCGTGTAGTGCTTATGCATATGAAAATGGCATTGGTTGTATGCTATGGAAAAAAGAGTTAATTGACGTACAAAAATTTGAAAGCCTTGGAGCCAATCTTTATCTTCGACTAGCCAATGCAGACTTGCTCAAAATTAATGATGTAAAGAGAAAGAGTAAAGGAATGGTTATAGCCATAGTGCTACCAACAATACTTGTGATCTTCATCATTCTTGCCATATACTTCTGGTGGAGATGGAAGGCTTACAAAAATGAATATAGCAGAAAAGGGAATAGACTGAAGTTGAGAACGGATGACATGATTGGGGACAAAAGTGAATTCAAAGAACTACCTCTTTATGATTTTGAGAAGCTGGCAATCGCAACAGACAGTTTTGCTTTAAGTAAGAAACTTGGACAAGGTGGTTTTGGTCCTGTATATAAGGGAACATTGTTAGATGGACAAGAAATAGCAATAAAGAGGCTTTCAAGAGCTTCTAATCAAGGGTATGAGGAATTTATAAATGAAGTGATTGTGATTTCAAAACTACAACATAGAAATCTTGTACAGCTTCTCGGTTGTTGCATTGAGGGAGAAGAGAAGATGCTAATCTACGAGTACATGCCCAACTCAAGTTTGGATGCATTTATCTTCGGTTCTGCTAAACAAAAACTCTTGGATTGGAGAAAAAGATTTAACATCATCAATGGAATTGCTCGAGGCCTCCTTTACCTTCATCGAGATTCAAGATTGAGAATTATTCATAGGGATTTGAAGGCAAGTAATATTTTACTAGATAAAGATATGAATCCTAAAATTTCGGACTTTGGTATGGCAAGAATTTTTGGTGGTAATGAAGTGGAAGCTAACACTATAAGAGTTGTTGGAACTTATGGATATATGTCACCTGAGTATGCAATGCAAGGTCAATTTTCGGAGAAATCGGATGTTTTTAGCTTTGGAGTTTTATTACTTGAAATTATAAGCGGAAAAAAGAATACAGGGTTCAACCACCACGAAGATGCTTTAAGCTTATTGGAATTCGCTTGGAAGTTGTGGATAGAAGACAATCTTATCGCTTTGATTGATCCAACAATATATGAATTGAGTTATCATTTAGAGATTTTGAGGTGCATCCAAGTGGGTCTTTTATGTGTTGAAGAATCTATAAATGATAGACCAAATATTGTTACCATTCTTTCAATGCTCAACAGTGAAATTGTGGATCTTCCTCTTCCAAAGCAACCAAGCTTTATTGCTAGACCAACTCAGAGAGATTCAAGGATATCTCAACAATGTGTAAATAAATATTCTACAAATAGTCTTACTGTGACCTCAGTTATAGGTCGATAG 2490 37.95 MNSAFPLLLLLSLVTFFSSNFCFGSTDTITSTDFIKHPSTIISNADSFELGWFSPPNSTAQYVGIWYHQISIQTLVWVANKDTPLNNTSGIFTISNDGNLVVLDEYNTIIWSSNITSPTANTTARILDSGNLVLEDPVSGVFIWESFQHPSNLLLPSMKLITNKRTQQKLQYTSWKTPSDPSKGNFSLALDVINIPEAVVWNNNGGSPYWRSGPWNGQSFIGFPNMISVYHIGFSLMIEDQTYSFSIFYNSNLLYNMVLSPEGILEQQFWNESKGNWEVSWSAFRTECDYYGVCGAFGVCNAEATPVCSCLTGFKPKVEDEWKRGNWSNGCVRITPLQCESSARNNSRAEEDGFLKLEMVKVPFLVEWSNSSTSGSDCKQECFENCSCSAYAYENGIGCMLWKKELIDVQKFESLGANLYLRLANADLLKINDVKRKSKGMVIAIVLPTILVIFIILAIYFWWRWKAYKNEYSRKGNRLKLRTDDMIGDKSEFKELPLYDFEKLAIATDSFALSKKLGQGGFGPVYKGTLLDGQEIAIKRLSRASNQGYEEFINEVIVISKLQHRNLVQLLGCCIEGEEKMLIYEYMPNSSLDAFIFGSAKQKLLDWRKRFNIINGIARGLLYLHRDSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGGNEVEANTIRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGKKNTGFNHHEDALSLLEFAWKLWIEDNLIALIDPTIYELSYHLEILRCIQVGLLCVEESINDRPNIVTILSMLNSEIVDLPLPKQPSFIARPTQRDSRISQQCVNKYSTNSLTVTSVIGR 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21968776 21972156 - MELO3C002542.2.1 Cme12g01412 344629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01412 829 Gene3D Phosphorylase Kinase; domain 1 486 586 - -
Cme12g01412 829 SUPERFAMILY Protein kinase-like (PK-like) 493 811 IPR011009 -
Cme12g01412 829 ProSiteProfiles PAN/Apple domain profile. 339 424 IPR003609 -
Cme12g01412 829 SMART ntp_6 349 423 IPR003609 -
Cme12g01412 829 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 9 812 - -
Cme12g01412 829 Pfam PAN-like domain 350 409 IPR003609 -
Cme12g01412 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 216 IPR036426 -
Cme12g01412 829 SMART blect_4 32 150 IPR001480 -
Cme12g01412 829 CDD B_lectin 39 150 IPR001480 -
Cme12g01412 829 CDD PAN_AP_plant 335 424 - -
Cme12g01412 829 PANTHER - 9 812 - -
Cme12g01412 829 Gene3D Transferase(Phosphotransferase) domain 1 587 788 - -
Cme12g01412 829 PIRSF SRK 1 829 IPR024171 GO:0004674
Cme12g01412 829 Gene3D - 20 149 IPR036426 -
Cme12g01412 829 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Cme12g01412 829 ProSiteProfiles Protein kinase domain profile. 511 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01412 829 Pfam Protein tyrosine and serine/threonine kinase 513 720 IPR001245 GO:0004672|GO:0006468
Cme12g01412 829 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Cme12g01412 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Cme12g01412 829 SMART serkin_6 511 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01412 829 CDD STKc_IRAK 517 783 - -
Cme12g01412 829 Pfam D-mannose binding lectin 74 176 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00354 Cme-Chr8:2239423 Cme12g01412 Cme-Chr12:21968776 0 dispersed
Cme12g01409 Cme-Chr12:21947518 Cme12g01412 Cme-Chr12:21968776 2.32E-175 dispersed
Cme12g01412 Cme-Chr12:21968776 Cme12g01417 Cme-Chr12:22003631 0 dispersed
Cme12g01411 Cme-Chr12:21964354 Cme12g01412 Cme-Chr12:21968776 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65319 PF07714 PK_Tyr_Ser-Thr 8.60E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01412 - - csv:105435156 1551.95