Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01413 ATGAACAATGGTGATGATATGAAGCATGACAAAGTGAATCAAGTTAAGCTCCAAGAGCTGCCTCTTTTTGATTTTGAGAAGTTGGCTACCGCAACTAACCATTTTCATTTCAATAACAAGCTTGGTCAGGGTGGGTTTGGGCCAGTGTACAAGGGAAAATTGGTAGATGGACAAGAAATAGCAGTAAAGAGGCTGTCAAAGACCTCCGGACAAGGACTTGAAGAGTTTACAAATGAAGTAATGGTGATTTCAAAACTACAACATAGAAATCTTGTGCAGCTTTTTGGTTGTTGTGTGGATGGAGAAGAAAGGATGCTAGTTTACGAGTACATGCCTAATGGAAGCTTGGATTCAATGGTTTTTGATTCAACTAAAGCCAAGGTTTTAGATTGGCAAAAAAGATTCAACGTCATCGAAGGAATTGCTCGAGGGCTTTTGTATCTTCATAGAGATTCGAGATTAAAAATCATTCATAGAGATCTCAAAGCTAGTAACATTTTACTGGATAGAGATCTAAATCCCAAAATTTCGGATTTTGGAACAGCTAGGATTTTCTACGGCGGCAACGAAGCTCAAGCTAGAACCACAAAAGTTGTTGGTACTTACGGCTACATGTCTCCAGAATACGTGTTGAATGGCCAATTTTCAGAGAAATCGGATGTGTTTAGTTTTGGAGTTTTGTTGCTTGAGACTATTAGTGGAAGAAAAAACACAAGCTTCTATGAAAACGAAGATGCATTGAGCCTTCTAGGATTTGCATGGAAACTATGGAGGGAAAACAATTTAGTTGCTTTGATTGATCAAACAATCTTCGAATTGCATTATGAAGCAGAGATTGTAAGGTGTATTCATGTGGGACTATTGTGTGTTCAAGAACTTGCAAAAGACAGACCAAATATAACAACAATTCTTTCAATGCTTCACAATGAGATCACAGATCTTCCAATGCCAAAGCAACCTGGATTTAGTAGCAATCAAATTGAGATACACACCGAGGGATGTGAACAAAATCATGTTGGAACTTATTCCACTAACATGATCACAATTACCTCATTTGATGTTGCTCTTCTACTCCAACAAAAAATGACATCCAACTTCATGTTCAATCATTTGTCTTTGCTCTGTTTCGTACCACTGTTTCTCCGACACTCGATCGCAGTCGACATCTTAAAAGCAGGACAATCCTTTAACGACACCCAAGTAATTGTTTCAGCCGCCGAAAAGTTTGAATTGGGATTCTTCACTCAGCCCAAGTCCTCCAATTTCAAGTATTTAGGAATATGGTACAAAAGCATTCCCGACGATGTCGTTTGGGTGGCAAACAGAGACAACCCAATTCTAAACTCTTCTGCCACTCTAAAATTCAATACAAATGGAAACTTAGTTCTCGTCAATCAAACAGGTCAGGCTTTTTGGTCTTCCAATTCAACAGCATCGCTTCTAAATCCAATCGCTCAACTACTAGATACAGGTAATTTCATGCTGAGAGATTCAAATTCAAGATCTGAAGATTACGTGTGGCAAAGTTTTAATTATCCCTCTGATACTCTGTTACCGGGAATGAAACTCGGATGGGACTCCAAAACAGGGCTTAATCGAAAGTTAATATCAAGAAAAAGTCAAAACGATCTGTCCTCTGGAGAACTCAGTTATGAAGTCAACTTAGAAGGGCTTGCTGAACTTGTGGTTCGTAAAAGAAACAAGACGATGTTTAGAGGAGGGCCATGGTTTGGCGATGGTTTTAAACGAGGTCGATCCAAAGGAGGGATTTTCATCTATAATCCTTCATTTGAGATATCATTTTCATATAATGCTCCAACTAATGATCCATACAAAGTTGTATTGGATTCAAGTGGATCTGTTATATTCTCTGTTTGGAGCATAGAGGAAAACAGATGGCGCACAACATACACGTTCGAAGGATCTGGCTGCGAAGACTACGATTTATGTGGGAATTTTGGCCTTTGTAGCTCTGGTTTAGTTGCAAGCTGTGGTTGTTTAGATGGGTTTGAACAGAAATCAGCTCAAAATTCTTCAGATGGGTGTGTTAGAAAGGATGAAAAAATTTGTAGAAAAGGAGAGGGATTTAGAAAGATGAGTGATGTGAAATGGCCTGATTCGACAGGGAACTTGGTGAAATTGAAAGTGGGTATTAAAAATTGTGAGACAGAGTGTTTGAATGATTGTTCTTGTTTGGCTTATGGCATTCTTTCACTTCCTAATATTGGGCCTGCTTGTGCTACATGGTTCGACAAATTGCTTGATATTAGATTTGCTCGTGATGTTGGAACTGGAGATGATCTATTTTTGAGAGAGGCTGCTTCAGAATTAGAACAGAGTGAAAGGAAGAGTATAATAGTTCCAGTGGTTGTGCCAATCATATCAGTGTTAATCTTCCTGACTTTAATCAGCTTTTTTATCATTAGAAATGTAAGAAGAAGAGCTAAAGATAATGGAGTTACTATCACTGAGGATCTAATTTATGAGAGTGAACTTGAGATGTCGATTGCGATAATTGAAGCTGCAACGAACAATTTCTCAACTTCTAATAAGATAGGGGAAGGAGGTTTTGGACCTGTTTATAAGGGAAGACTCCCATTTGGGGAAGAAATTGCAGTAAAGAAGCTAGCAGAAAGATCACGTCAAGGATTGGAAGAGTTTAAAAATGAGGTTCTTTTGATTTCCCAACTTCAACATCGAAATCTTGTCAAACTTCTTGGTTTCTGCATTCACAAGGAAGAAACATTACTTATTTATGAATACATGCCCAATAAAAGTTTGGACTACTTCCTTTTCGATGACAGAAGACGATCTTTACTCAATTGGCAAATGAGAATTGATATCATAGTCGGCATAGCTCGAGGGCTTCTTTATCTTCATCGAGATTCAAGACTTCGAATCATACATAGAGATCTTAAACCTGCCAATATTTTATTGGATAAGGAAATGAAGCCAAAAATTTCAGACTTTGGCACTGCACGCATGTTTGGTGAATATCAAATGGAAACAAAAACAAAAAGAGTTATTGGAACCTATGGTTATATGTCTCCAGAATATGCAATGGGTGGTTGCTTTTCATTCAAATCTGATGTTTATAGCTTCGGAGTTATGATTTTAGAGATAGTTAGCGGCAAGAGGAACCAAGGGTTTTTTCTTCTCGGACATGCATGGAAACTATGGAACGATGGAAAGGCCTTGGATTTAATGGATGGAGTGTTGGGTCGTGATCAATTTCAAGAATGTAAAGCACTTAAATATATAAATATTGGACTTTTATGTGTTCAAGCACGTCCCGAGGAGAGACCAATTATGTCATCTGTGATCTCAATGTTGGAAAATGATAACATGCCATTGATTCATCCAAAAGGACCTGGGTTCTACGAAGAAAGATTTTTGTCTGATATCGACTCATCATTTTCTACGTCAAATAATGTTACTATTACACTGTTAGAGGATGGTCGCTAA 3465 38.07 MNNGDDMKHDKVNQVKLQELPLFDFEKLATATNHFHFNNKLGQGGFGPVYKGKLVDGQEIAVKRLSKTSGQGLEEFTNEVMVISKLQHRNLVQLFGCCVDGEERMLVYEYMPNGSLDSMVFDSTKAKVLDWQKRFNVIEGIARGLLYLHRDSRLKIIHRDLKASNILLDRDLNPKISDFGTARIFYGGNEAQARTTKVVGTYGYMSPEYVLNGQFSEKSDVFSFGVLLLETISGRKNTSFYENEDALSLLGFAWKLWRENNLVALIDQTIFELHYEAEIVRCIHVGLLCVQELAKDRPNITTILSMLHNEITDLPMPKQPGFSSNQIEIHTEGCEQNHVGTYSTNMITITSFDVALLLQQKMTSNFMFNHLSLLCFVPLFLRHSIAVDILKAGQSFNDTQVIVSAAEKFELGFFTQPKSSNFKYLGIWYKSIPDDVVWVANRDNPILNSSATLKFNTNGNLVLVNQTGQAFWSSNSTASLLNPIAQLLDTGNFMLRDSNSRSEDYVWQSFNYPSDTLLPGMKLGWDSKTGLNRKLISRKSQNDLSSGELSYEVNLEGLAELVVRKRNKTMFRGGPWFGDGFKRGRSKGGIFIYNPSFEISFSYNAPTNDPYKVVLDSSGSVIFSVWSIEENRWRTTYTFEGSGCEDYDLCGNFGLCSSGLVASCGCLDGFEQKSAQNSSDGCVRKDEKICRKGEGFRKMSDVKWPDSTGNLVKLKVGIKNCETECLNDCSCLAYGILSLPNIGPACATWFDKLLDIRFARDVGTGDDLFLREAASELEQSERKSIIVPVVVPIISVLIFLTLISFFIIRNVRRRAKDNGVTITEDLIYESELEMSIAIIEAATNNFSTSNKIGEGGFGPVYKGRLPFGEEIAVKKLAERSRQGLEEFKNEVLLISQLQHRNLVKLLGFCIHKEETLLIYEYMPNKSLDYFLFDDRRRSLLNWQMRIDIIVGIARGLLYLHRDSRLRIIHRDLKPANILLDKEMKPKISDFGTARMFGEYQMETKTKRVIGTYGYMSPEYAMGGCFSFKSDVYSFGVMILEIVSGKRNQGFFLLGHAWKLWNDGKALDLMDGVLGRDQFQECKALKYINIGLLCVQARPEERPIMSSVISMLENDNMPLIHPKGPGFYEERFLSDIDSSFSTSNNVTITLLEDGR 1154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21972870 21980428 + MELO3C002541.2.1 Cme12g01413 344630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01413 1154 CDD STKc_IRAK 852 1113 - -
Cme12g01413 1154 CDD B_lectin 400 513 IPR001480 -
Cme12g01413 1154 ProSitePatterns Serine/Threonine protein kinases active-site signature. 967 979 IPR008271 GO:0004672|GO:0006468
Cme12g01413 1154 SMART blect_4 393 513 IPR001480 -
Cme12g01413 1154 ProSiteProfiles Bulb-type lectin domain profile. 387 508 IPR001480 -
Cme12g01413 1154 SUPERFAMILY alpha-D-mannose-specific plant lectins 436 543 IPR036426 -
Cme12g01413 1154 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 6 351 - -
Cme12g01413 1154 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 378 1150 - -
Cme12g01413 1154 SUPERFAMILY Protein kinase-like (PK-like) 20 329 IPR011009 -
Cme12g01413 1154 Pfam D-mannose binding lectin 436 539 IPR001480 -
Cme12g01413 1154 SMART serkin_6 35 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01413 1154 SMART serkin_6 846 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01413 1154 Gene3D Phosphorylase Kinase; domain 1 8 110 - -
Cme12g01413 1154 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Cme12g01413 1154 ProSiteProfiles Protein kinase domain profile. 35 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01413 1154 Pfam Protein tyrosine and serine/threonine kinase 848 1111 IPR001245 GO:0004672|GO:0006468
Cme12g01413 1154 Pfam Protein tyrosine and serine/threonine kinase 36 250 IPR001245 GO:0004672|GO:0006468
Cme12g01413 1154 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 378 1150 - -
Cme12g01413 1154 Gene3D - 383 511 IPR036426 -
Cme12g01413 1154 Gene3D Transferase(Phosphotransferase) domain 1 922 1118 - -
Cme12g01413 1154 Gene3D Transferase(Phosphotransferase) domain 1 111 316 - -
Cme12g01413 1154 Gene3D Phosphorylase Kinase; domain 1 808 921 - -
Cme12g01413 1154 ProSiteProfiles PAN/Apple domain profile. 690 773 IPR003609 -
Cme12g01413 1154 SUPERFAMILY Protein kinase-like (PK-like) 831 1112 IPR011009 -
Cme12g01413 1154 Pfam S-locus glycoprotein domain 571 673 IPR000858 GO:0048544
Cme12g01413 1154 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 6 351 - -
Cme12g01413 1154 ProSiteProfiles Protein kinase domain profile. 846 1119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01413 1154 Pfam PAN-like domain 690 756 IPR003609 -
Cme12g01413 1154 CDD STKc_IRAK 41 307 - -
Cme12g01413 1154 CDD PAN_AP_plant 690 773 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01413 Cme-Chr12:21972870 Cme12g01415 Cme-Chr12:21981032 0 dispersed
Cme12g01413 Cme-Chr12:21972870 Cme12g01414 Cme-Chr12:21977385 5.28E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65320 PF07714 PK_Tyr_Ser-Thr 7.60E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01413 - - cmo:103489252 2306.95