Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01414 TTCAATCATTTGTCTTTGCTCTGTTTCGTACCACTGTTTCTCCGACACTCGATCGCAGTCGACATCTTAAAAGCAGGACAATCCTTTAACGACACCCAAGTAATTGTTTCAGCCGCCGAAAAGTTTGAATTGGGATTCTTCACTCAGCCCAAGTCCTCCAATTTCAAGTATTTAGGAATATGGTACAAAAGCATTCCCGACGATGTCGTTTGGGTGGCAAACAGAGACAACCCAATTCTAAACTCTTCTGCCACTCTAAAATTCAATACAAATGGAAACTTAGTTCTCGTCAATCAAACAGGTCAGGCTTTTTGGTCTTCCAATTCAACAGCATCGCTTCTAAATCCAATCGCTCAACTACTAGATACAGGTAATTTCATGCTGAGAGATTCAAATTCAAGATCTGAAGATTACGTGTGGCAAAGTTTTAATTATCCCTCTGATACTCTGTTACCGGGAATGAAACTCGGATGGGACTCCAAAACAGGGCTTAATCGAAAGTTAATATCAAGAAAAAGTCAAAACGATCTGTCCTCTGGAGAACTCAGTTATGAAGTCAACTTAGAAGGGCTTGCTGAACTTGTGGTTCGTAAAAGAAACAAGACGATGTTTAGAGGAGGGCCATGGTTTGGCGATGGTTTTAAACGAGGTCGATCCAAAGGAGGGATTTTCATCTATAATCCTTCATTTGAGATATCATTTTCATATAATGCTCCAACTAATGATCCATACAAAGTTGTATTGGATTCAAGTGGATCTGTTATATTCTCTGTTTGGAGCATAGAGGAAAACAGATGGCGCACAACATACACGTTCGAAGGATCTGGCTGCGAAGACTACGATTTATGTGGGAATTTTGGCCTTTGTAGCTCTGGTTTAGTTGCAAGCTGTGGTTGTTTAGATGGGTTTGAACAGAAATCAGCTCAAAATTCTTCAGATGGGTGTGTTAGAAAGGATGAAAAAATTTGTAGAAAAGGAGAGGGATTTAGAAAGATGAGTGATGTGAAATGGCCTGATTCGACAGGGAACTTGGTGAAATTGAAAGTGGGTATTAAAAATTGTGAGACAGAGTGTTTGAATGATTGTTCTTGTTTGGCTTATGGCATTCTTTCACTTCCTAATATTGGGCCTGCTTGTGCTACATGGTTCGACAAATTGCTTGATATTAGATTTGCTCGTGATGTTGGAACTGGAGATGATCTATTTTTGAGAGAGGCTGCTTCAGAATTAGAACAGAGTGAAAGGAAGAGTATAATAGTTCCAGTGGTTGTGCCAATCATATCAGTGTTAATCTTCCTGACTTTAATCAGCTTTTTTATCATTAGAAATGTAAGAAGAAGAGCTAAAGCAGCAGATAATGGAGTTACAATCACTCAGGATTTCATTCATGAGAATGAACTTGAGATGACGATTTCGATAATTGAAGCTGCAACGAACAATTTCTCAACTTCTAATAAGATAGGGGAAGGAGGTTTTGGACCTGTTTATAAGGGGAGGCTTCCATCAGGCCAAGAAATTGCGGTAAAGAAGCTAGCAGAAAGATCACGTCAAGGATTAGAGGAGTTTAAAAATGAGGTTCTTTTGATTTCCCAACTTCAACATCGAAATCTTGTCAAACTTCTTGGTTTCTGCATTCACAAGGAAGAAACATTACTTATTTATGAATACATGCCCAATAAAAGTTTGGACTACTTCCTTTTCGATGACAGAAGACGATCTTTACTCAATTGGCAAATGAGAATTGATATCATAGTTGGCATAGCTCGAGGGCTTCTTTATCTTCATCGAGATTCAAGACTTCGAATAATTCACAGAGATCTTAAAGCTGCCAATATCTTATTAGATAATGAAATGAAGCCAAAGATTTCAGATTTTGGCATTGCACGCATGTTTGGTGAATATCAAATGGAAACAAGAACAAAGACGGTTATCGGAACTTATGGTTATACGTCTCCAGAATATGCAATGGAAGGTTACTTTTCATTCAAATCAGATGTTTACAGTTTTGGAGTTATGATTTTAGAAATACTTAGCGGCAAGAGAAACCAAGGCTTTTTTCAGTCGGAACATCAATTGAATCTTCTTGGATATGCATGGAAACTTTGGAATGAAGGAAAGACCTTGGAATTAATAGATGAAGCGTTGGGTGATGAGTTCCAAGAATGTGAGGCACTTCAATACATAAATATTGGACTTTTATGTGTTCAAGCACGTCCCGAAGAAAGACCTATTATGTCATCGGTGCTTTCAATGTTAGAAAATGATAACATGCCATTGATTCATCCAAAAGGACCTGGGTTCTACGGAGAAAGATTTTTATCTGATATTGACTCCTCCTCGTTTTCTATTTCTAATAATGTTACTATTACATTGATAGATGATGGTCGTTAA 2391 37.93 FNHLSLLCFVPLFLRHSIAVDILKAGQSFNDTQVIVSAAEKFELGFFTQPKSSNFKYLGIWYKSIPDDVVWVANRDNPILNSSATLKFNTNGNLVLVNQTGQAFWSSNSTASLLNPIAQLLDTGNFMLRDSNSRSEDYVWQSFNYPSDTLLPGMKLGWDSKTGLNRKLISRKSQNDLSSGELSYEVNLEGLAELVVRKRNKTMFRGGPWFGDGFKRGRSKGGIFIYNPSFEISFSYNAPTNDPYKVVLDSSGSVIFSVWSIEENRWRTTYTFEGSGCEDYDLCGNFGLCSSGLVASCGCLDGFEQKSAQNSSDGCVRKDEKICRKGEGFRKMSDVKWPDSTGNLVKLKVGIKNCETECLNDCSCLAYGILSLPNIGPACATWFDKLLDIRFARDVGTGDDLFLREAASELEQSERKSIIVPVVVPIISVLIFLTLISFFIIRNVRRRAKAADNGVTITQDFIHENELEMTISIIEAATNNFSTSNKIGEGGFGPVYKGRLPSGQEIAVKKLAERSRQGLEEFKNEVLLISQLQHRNLVKLLGFCIHKEETLLIYEYMPNKSLDYFLFDDRRRSLLNWQMRIDIIVGIARGLLYLHRDSRLRIIHRDLKAANILLDNEMKPKISDFGIARMFGEYQMETRTKTVIGTYGYTSPEYAMEGYFSFKSDVYSFGVMILEILSGKRNQGFFQSEHQLNLLGYAWKLWNEGKTLELIDEALGDEFQECEALQYINIGLLCVQARPEERPIMSSVLSMLENDNMPLIHPKGPGFYGERFLSDIDSSSFSISNNVTITLIDDGR 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21977385 21984272 + MELO3C002536.2.1 Cme12g01414 344631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01414 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 176 IPR036426 -
Cme12g01414 796 Gene3D - 16 144 IPR036426 -
Cme12g01414 796 SMART blect_4 26 146 IPR001480 -
Cme12g01414 796 Gene3D Phosphorylase Kinase; domain 1 442 556 - -
Cme12g01414 796 ProSiteProfiles Protein kinase domain profile. 481 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01414 796 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 792 - -
Cme12g01414 796 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 13 792 - -
Cme12g01414 796 Gene3D Transferase(Phosphotransferase) domain 1 557 759 - -
Cme12g01414 796 Pfam PAN-like domain 323 389 IPR003609 -
Cme12g01414 796 CDD B_lectin 33 146 IPR001480 -
Cme12g01414 796 SUPERFAMILY Protein kinase-like (PK-like) 468 770 IPR011009 -
Cme12g01414 796 Pfam D-mannose binding lectin 69 172 IPR001480 -
Cme12g01414 796 Pfam Protein tyrosine and serine/threonine kinase 483 751 IPR001245 GO:0004672|GO:0006468
Cme12g01414 796 ProSiteProfiles Bulb-type lectin domain profile. 20 141 IPR001480 -
Cme12g01414 796 ProSiteProfiles PAN/Apple domain profile. 323 406 IPR003609 -
Cme12g01414 796 CDD PAN_AP_plant 323 406 - -
Cme12g01414 796 PIRSF SRK 1 794 IPR024171 GO:0004674
Cme12g01414 796 Pfam S-locus glycoprotein domain 204 306 IPR000858 GO:0048544
Cme12g01414 796 SMART serkin_6 481 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01414 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Cme12g01414 796 CDD STKc_IRAK 487 754 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01414 Cme-Chr12:21977385 Cme12g01416 Cme-Chr12:21991983 0 dispersed
Cme12g01413 Cme-Chr12:21972870 Cme12g01414 Cme-Chr12:21977385 5.28E-110 tandem
Cme12g01414 Cme-Chr12:21977385 Cme12g01415 Cme-Chr12:21981032 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65321 PF07714 PK_Tyr_Ser-Thr 5.70E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01414 - - cmo:103489252 1477.61