Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01415 ATGACATTCAACTTCAGCCTCAATCATTTGTCTTTCCTCTGTTTCATACTTCTGTTTCTCAGACACTCAATCGCAGTCGACATCTTAAAAGCAGGGCAATCCTTTAATGACACCCAAACAATTGTTTCAGCTGCCGAAAAGTTTGAATTGGGATTCTTCACTCAGCCCAAGTCCTCCAATTTCAAGTATTTAGGAATTTGGTATAAAAGCCTTCCCGACTATGTTGTTTGGGTCGCTAACAGAGACAACCCAATTCTAAACTCCTCTGCCGCTCTAAAGTTCAATACAAATGGAAACTTAATTCTCGTCAATCAAACAGGTCATGTTTTTTGGTCCTCTAATTCAACATCACTTCAAGATCCAATTGCTCAACTCCTAGATACAGGTAATTTCAAGCTAAGAGATTTAAATGCTAGATCTGAAGATTCTGTGTGGCAGAGTTTTGACTATCCCTCTGATACTCTGTTACCGGGAATGAAACTTGGATGGGACTCCAAAACAGGGCTTAATCGGAAGTTAATATCAAGAAAAAGTCAAAGCGATCTGTCCTCTGGAGAACTCAGTTATGAAGTCAACTTAGATGGGCTTGCTGAACTTGTGGTTCGTAAAGGAAACAAGACGATGTTTAGAGGAGGGCCATGGTTTGGCCATGGTTTTGGAGGTCGATCCAGTGGAGGGATTTTCGTCTATAATCCTTCATTTGAGATATCATTTTCATATAATGCTCCAACTAATGATCCATACAGAGTTGTATTGGATTCAAGTGGATCTGTTATACACTCTATTTGGAGTCAAGAGGAAAACGGATGGCGCAAAAATTACACATTCGAAGGATCTGGCTGCAACGACTACGATTTATGTGGGAATTTTGGTCTTTGTACGTCTGTTTTAGGAAGCTGTGGCTGTTTAGATGGGTATAAACAAAAATCAGCTCAAAATTCTTCAGATAGGTGCGTGAGAAAGGATGATAAAATTTGTAGAGAAGGAGAAGGATTTAGAAAGATAAGTGATGTGAAATGGCCTGATTCCAGAGGGAACATAGTGAAATTGAAAGCGGGTGTTCAAAATTGTGAAACAGAGTGTTTGAATGATTGTTCTTGCTTGGCCTACGGCACACTTTCACTTCCTAAAACTGGGCTTACTTGTGTCACATGGATTGACAAGTTGCTTGATATTAGATATGTTCGTGATGTTGGGACTGGAGATGATCTGTTTTTGAGAGTGGCTGCTTCAGAATTAGAAGGGAGTGAAGGGAAGAGTATAATAGTTCCAGTGGTTGTGCCAGTCATATCAGTATTAATCTTATTGGCTTTAATCAGCTTTTATATCATTAGGAATGTAAGAAGAAGAGCTGAAGCAGATAATGGAGTTACAATCACTCAGGATTTCATTCATGAGAATGAACTTGAGATGACGATTTCGATAATTGAAGCTGCAACGAACAATTTCTCAACTTCTAATAAGATAGGGGAAGGAGGTTTTGGACCTGTTTATAAGGGGAGGCTTCCATCAGGCCAAGAAATTGCGGTAAAGAAGCTAGCAGAAAGATCACGTCAAGGATTAGAGGAGTTTAAAAATGAGGTTCTTTTGATTTCCCAACTTCAACATCGAAATCTTGTCAAACTTCTTGGTTTCTGCATTCACAAGGAAGAAACATTACTTATTTATGAATACATGCCCAATAAAAGTTTGGACTACTTCCTTTTCGATGACAGAAGACGATCTTTACTCAATTGGCAAATGAGAATTGATATCATAGTTGGCATAGCTCGAGGGCTTCTTTATCTTCATCGAGATTCAAGACTTCGAATAATTCACAGAGATCTTAAAGCTGCCAATATCTTATTAGATAATGAAATGAAGCCAAAGATTTCAGATTTTGGCATTGCACGCATGTTTGGTGAATATCAAATGGAAACAAGAACAAAGACGGTTATCGGAACTTATGGTTATACGTCTCCAGAATATGCAATGGAAGGTTACTTTTCATTCAAATCAGATGTTTACAGTTTTGGAGTTATGATTTTAGAAATACTTAGCGGCAAGAGAAACCAAGGCTTTTTTCAGTCGGAACATCAATTGAATCTTCTTGGATATGCATGGAAACTTTGGAATGAAGGAAAGACCTTGGAATTAATAGATGAAGCGTTGGGTGATGAGTTCCAAGAATGTGAGGCACTTCAATACATAAATATTGGACTTTTATGTGTTCAAGCACGTCCCGAAGAAAGACCTATTATGTCATCGGTGCTTTCAATGTTAGAAAATGATAACATGCCATTGATTCATCCAAAAGGACCTGGGTTCTACGGAGAAAGATTTTTATCTGATATTGACTCCTCCTCGTTTTCTATTTCTAATAATGTTACTATTACATTGATAGATGATGGTCCTTCAATCTCTATCAACAATCTACAAAGAGAAGCAATGGAAAAAATGGCATCCAACTTCAGGCAAAATCCCCTGTCTTTGCTCTGTTTTTGGATACTAATACCTCCATTTCTCAAACAGTCAATAGCAGTGGATACCTTAAAAGCAGGCCAGTCCGTTAACGATACTCAATTGATTGTTTCAGCCACACAGAAGTTTGAATTAGGATTCTTCGCTGAACCCAAAGCCTCAAATTTCAAGTACTTAGGAATATGGTATAAAGAAATTCCCGATGTGGTTGTTTGGGTGGCAAACAGAGACAACCCAATTATAAATTCCTCTGCCACTTTGAATATCAATGGAGATGGAAACTTAGTTCTTTTAAATCAAACAGGTGAAGCTTTTTGGTCTTCAAATTCTTCAAGATCAGTTAAAAACCCCATTGCCCAGCTGCTGGATACAGGTAATTTTGTGCTAAGAGATTCGAATTCAGAGTCTGAAAATTATGCGTGGCAGAGCTTTGATTACCCATTTGATACTCTGTTACCGGGGATGAAACTCGGGTGGGACTTGAAAACAGGTTTAAATCGAAAGTTAATATCAAGGAGAAGTCAAATGGATTTATCTTCAGGAAAATTCAGCTATGGGATTAACATAGACGGGCTTCCTCAACTTATGGTTCGTGAAGGAAACAAGACGATGTTTAGAGGGTGGCCATGGTTTGGGGATGGTTTTAGGCGGAGTCGGTCACAAGAGGCAAATTTCGAGTACAATACTTCATTTGAGATATCATTTTCATATAACAACAATCCAGATAATGAGCCTTCAAGAGTTGTGTTGGATTCAAGTGGGTTTGTTGTACACTATGTGTGGAGCAAAGGGGACGATAAATGGCACTCATCTTACACGTTTGAAGGATCTGGGTGCAACAACTATGGATTATGTGGGAATTTTGGTCTCTGTAGCTCTGTTTTAGTAGCAAGTTGTGGTTGTTTAGATGGGTTTGAACAAAAGCCAAACCAAAATTTTTCAGATGGGTGTGTGAGAAAGGATCCAGAAACCTGCAGAAAAGGAGAGGGTTTTAGAAAGATAAGTAATGTGAAATGGCCAGATTCAAGTGGGGAGTTTGTGAAAATAAAATTGGGTGCTAAAAATTGCGAGAAAGAGTGTTTGAATGATTGTTCTTGCTTGGCTTATGGTGCATTGGAAATTCCAGGGATTGGGGCCTCCTGTGTCAACTGGTTTGGGAAATTGATTGATATTAGATTTAATCGTGATGCTGGAACCGGAGAAGATCTGTTTGTGAGAGTAGCCGCTTCAGAATTAGAATCAAGTAACAAGAAGAGTGGAGTTGCGGTGGTTGTGGCAATGGTAATCATATCAGTACTAATCTTCTTGGCTTTAATCAGCTGGTTTATCATCAGGAAAGTAAGAAGAAGTGCAAGAGACAAAGGAGCTGTGATGATTGAAGCACTGATCGAAGAAAATGAACTTGAAATGCCAATTGGTTTAGTAGAAGGAGCAACAGATCACTTTTCCATTTCCAATAAGATAGGAGAAGGAGGTTTTGGGCCAGTTTATAAGGGGAAACTTCCATCTGGCAATGAAATTGCTGTAAAAAAACTAGCAGAAAGATCTCGTCAAGGGATGCAAGAGTTTAAGAATGAGTGTCTACTGAGTTTGATTGGTTTTGAAAGGACTAATAGATCACGAGATGAAACTGTTAAAATAGATGAACAAAGACGTTCCTTACTCAATTGGCCAATGAGGATCGATATCATAGTTGGTATAGCTCGAGGACTTCTTTATCTCCATCGAGATTCAAGACTTCGAATAATACATAGAGATCTTAAAGCTGCCAATATTTTGTTAGATAGTGAAATGAAGCCAAAGATCTCTGACTTCGGCATTGCACGGATGTTTGGTGAAGATCAAACAGAAACCAAAACAAAAAGAGTTGTTGGGACTTTTGGCTATATGTCTCCGGAATATGTAATAGATGGCCGTTTTTCATTCAAATCTGATGTTTTCAGCTTTGGAGTTATGCTCTTGGAAATAGTTAGTGGCAAAAAGAACCAACGGTTTTTTCACACTGAACATCATCAACTAAATCTTCTTGGACATGTGTGGAAACTTTGGAATGCAGGAAGGGCATTGGAATTTATAGACGAGACATTGAGAGATCAGGTTGAAGAATATGAAGCACTAAAATACATAAATATTGGACTTTTATGTATTCAAGGACGTCCAGAGAAAAGACCAACTATGTCATCTGTGCTTTCCATGTTAGAGAATAATAATATGGAATTCATATCTCCAGGGCGACCAGGATTCTACGAAGAAAGATTTGAATGGCTTGATGCTGATAGTTCACCACCACTAGATGTTACACTAACTTCTAGTTCAAACAATGGTGATCGTTTTGAGGCGTATGACCACCTCTTTTCTTCATTTATTTCCCCTCTATCCATTTACAACCGTAGTTTTTAA 4860 38.44 MTFNFSLNHLSFLCFILLFLRHSIAVDILKAGQSFNDTQTIVSAAEKFELGFFTQPKSSNFKYLGIWYKSLPDYVVWVANRDNPILNSSAALKFNTNGNLILVNQTGHVFWSSNSTSLQDPIAQLLDTGNFKLRDLNARSEDSVWQSFDYPSDTLLPGMKLGWDSKTGLNRKLISRKSQSDLSSGELSYEVNLDGLAELVVRKGNKTMFRGGPWFGHGFGGRSSGGIFVYNPSFEISFSYNAPTNDPYRVVLDSSGSVIHSIWSQEENGWRKNYTFEGSGCNDYDLCGNFGLCTSVLGSCGCLDGYKQKSAQNSSDRCVRKDDKICREGEGFRKISDVKWPDSRGNIVKLKAGVQNCETECLNDCSCLAYGTLSLPKTGLTCVTWIDKLLDIRYVRDVGTGDDLFLRVAASELEGSEGKSIIVPVVVPVISVLILLALISFYIIRNVRRRAEADNGVTITQDFIHENELEMTISIIEAATNNFSTSNKIGEGGFGPVYKGRLPSGQEIAVKKLAERSRQGLEEFKNEVLLISQLQHRNLVKLLGFCIHKEETLLIYEYMPNKSLDYFLFDDRRRSLLNWQMRIDIIVGIARGLLYLHRDSRLRIIHRDLKAANILLDNEMKPKISDFGIARMFGEYQMETRTKTVIGTYGYTSPEYAMEGYFSFKSDVYSFGVMILEILSGKRNQGFFQSEHQLNLLGYAWKLWNEGKTLELIDEALGDEFQECEALQYINIGLLCVQARPEERPIMSSVLSMLENDNMPLIHPKGPGFYGERFLSDIDSSSFSISNNVTITLIDDGPSISINNLQREAMEKMASNFRQNPLSLLCFWILIPPFLKQSIAVDTLKAGQSVNDTQLIVSATQKFELGFFAEPKASNFKYLGIWYKEIPDVVVWVANRDNPIINSSATLNINGDGNLVLLNQTGEAFWSSNSSRSVKNPIAQLLDTGNFVLRDSNSESENYAWQSFDYPFDTLLPGMKLGWDLKTGLNRKLISRRSQMDLSSGKFSYGINIDGLPQLMVREGNKTMFRGWPWFGDGFRRSRSQEANFEYNTSFEISFSYNNNPDNEPSRVVLDSSGFVVHYVWSKGDDKWHSSYTFEGSGCNNYGLCGNFGLCSSVLVASCGCLDGFEQKPNQNFSDGCVRKDPETCRKGEGFRKISNVKWPDSSGEFVKIKLGAKNCEKECLNDCSCLAYGALEIPGIGASCVNWFGKLIDIRFNRDAGTGEDLFVRVAASELESSNKKSGVAVVVAMVIISVLIFLALISWFIIRKVRRSARDKGAVMIEALIEENELEMPIGLVEGATDHFSISNKIGEGGFGPVYKGKLPSGNEIAVKKLAERSRQGMQEFKNECLLSLIGFERTNRSRDETVKIDEQRRSLLNWPMRIDIIVGIARGLLYLHRDSRLRIIHRDLKAANILLDSEMKPKISDFGIARMFGEDQTETKTKRVVGTFGYMSPEYVIDGRFSFKSDVFSFGVMLLEIVSGKKNQRFFHTEHHQLNLLGHVWKLWNAGRALEFIDETLRDQVEEYEALKYINIGLLCIQGRPEKRPTMSSVLSMLENNNMEFISPGRPGFYEERFEWLDADSSPPLDVTLTSSSNNGDRFEAYDHLFSSFISPLSIYNRSF 1619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21981032 21989830 + MELO3C002538.2.1 Cme12g01415 344632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01415 1619 CDD PAN_AP_plant 1144 1228 - -
Cme12g01415 1619 ProSiteProfiles Protein kinase domain profile. 483 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01415 1619 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 794 - -
Cme12g01415 1619 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 832 1573 - -
Cme12g01415 1619 SUPERFAMILY Protein kinase-like (PK-like) 1293 1584 IPR011009 -
Cme12g01415 1619 SUPERFAMILY Protein kinase-like (PK-like) 470 773 IPR011009 -
Cme12g01415 1619 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 179 IPR036426 -
Cme12g01415 1619 SMART serkin_6 483 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01415 1619 SMART serkin_6 1302 1561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01415 1619 ProSiteProfiles Protein kinase domain profile. 1302 1561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01415 1619 SMART ntp_6 327 408 IPR003609 -
Cme12g01415 1619 SMART ntp_6 1146 1227 IPR003609 -
Cme12g01415 1619 ProSiteProfiles PAN/Apple domain profile. 1145 1228 IPR003609 -
Cme12g01415 1619 Gene3D Phosphorylase Kinase; domain 1 1264 1353 - -
Cme12g01415 1619 Gene3D Phosphorylase Kinase; domain 1 445 558 - -
Cme12g01415 1619 SMART blect_4 32 151 IPR001480 -
Cme12g01415 1619 SMART blect_4 847 967 IPR001480 -
Cme12g01415 1619 CDD B_lectin 848 967 IPR001480 -
Cme12g01415 1619 ProSiteProfiles Bulb-type lectin domain profile. 841 962 IPR001480 -
Cme12g01415 1619 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 17 794 - -
Cme12g01415 1619 CDD B_lectin 39 151 IPR001480 -
Cme12g01415 1619 Gene3D Transferase(Phosphotransferase) domain 1 1363 1562 - -
Cme12g01415 1619 Gene3D Transferase(Phosphotransferase) domain 1 559 761 - -
Cme12g01415 1619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Cme12g01415 1619 Pfam S-locus glycoprotein domain 1022 1128 IPR000858 GO:0048544
Cme12g01415 1619 Pfam S-locus glycoprotein domain 209 309 IPR000858 GO:0048544
Cme12g01415 1619 CDD STKc_IRAK 489 756 - -
Cme12g01415 1619 ProSiteProfiles PAN/Apple domain profile. 326 409 IPR003609 -
Cme12g01415 1619 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 832 1573 - -
Cme12g01415 1619 Pfam D-mannose binding lectin 75 177 IPR001480 -
Cme12g01415 1619 Pfam D-mannose binding lectin 890 993 IPR001480 -
Cme12g01415 1619 Pfam Protein tyrosine and serine/threonine kinase 1371 1553 IPR001245 GO:0004672|GO:0006468
Cme12g01415 1619 Pfam Protein tyrosine and serine/threonine kinase 485 753 IPR001245 GO:0004672|GO:0006468
Cme12g01415 1619 Gene3D - 837 964 IPR036426 -
Cme12g01415 1619 Gene3D - 22 148 IPR036426 -
Cme12g01415 1619 ProSiteProfiles Bulb-type lectin domain profile. 26 146 IPR001480 -
Cme12g01415 1619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1402 1414 IPR008271 GO:0004672|GO:0006468
Cme12g01415 1619 Pfam PAN-like domain 1145 1211 IPR003609 -
Cme12g01415 1619 Pfam PAN-like domain 326 392 IPR003609 -
Cme12g01415 1619 CDD PAN_AP_plant 326 409 - -
Cme12g01415 1619 SUPERFAMILY alpha-D-mannose-specific plant lectins 890 992 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01413 Cme-Chr12:21972870 Cme12g01415 Cme-Chr12:21981032 0 dispersed
Cme12g01415 Cme-Chr12:21981032 Cme12g01425 Cme-Chr12:22035451 0 dispersed
Cme12g01414 Cme-Chr12:21977385 Cme12g01415 Cme-Chr12:21981032 0 tandem
Cme12g01415 Cme-Chr12:21981032 Cme12g01416 Cme-Chr12:21991983 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65322 PF07714 PK_Tyr_Ser-Thr 2.00E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01415 - - bhj:120084118 1636.31