Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01416 ATGGAAAATTCTTTATCTTTTCTTTTTTTCTTCACACTCATACTTCTGTTTCCGCAAAAATCCATTGCAGACGATAGAATAAAACAACACCAATCCATTAACGACACCCAACTAATTGTTTCAGCCGCCCAAATTTTTGAATTGGGATTCTTCAATGAACCGAAACCCTCCAATTTAAGGTATTTAGGAATATGGTACAAGGGCATTCCCGATGTTGTCGTTTGGGTCGCAAACAGAGACAACCCAATTCTAAACTCCTCTGCTACTTTGACTTTCAATGGAGATGGAAACTTGGTTCTCATCAATCAATCAGGTTTCCATTTTTGGTCTTCAAACTCAACACGCTCGATTCAAAATCCCATCGCTCAACTTCTGGATACTGGAAATTTGGTGTTGAGAGATTCAAATTCCGGGTCAGAAAATTACGAGTGGCAGAGCTTTGATTATCCCTCTGATACTCTGTTACCGGGAATGAAAGTCGGGTGGGACTCTAAAACAGGACTTAACCGAAAATTAACATCTTGGAGAAGTCCAAATAATCCATCCTCAGGAGAATTCAGTTTTAGCATCAACACAGATGGGCTTCCTCAATTCTTGGTTAGTAAAAGAAACAAGACGTTGTACAGAGGTTGGCCTTGGTATGATCATGATTTTGGACAGGGTTACGGTAATGGGTTTGATTACAATCTCGTCTTTAATACTTCCATGGAGATATCATTTTCATATAACTATTCAGCGACCAGTCGTACAAGAATTGTGATGGATTCAAGCGGGTCGGTCAATCGGTACGTGTGGAGCGATGTAGGAGAAGAATGGCGCAATGAATTCACGTTTAATGGAGCTGGTTGTAACGACTATGACTTGTGTGGAGATTTTGGTATCTGTGACGCTGTAGTAACAGCAACTTGCGGTTGTTTAGATGGGTTTAAACCAATCTCAACCCAAAATTTCTCAAATGGGTGCGTTAGAAAGGATCAAAATATTTGCAAAGTTGGAGATGGGTTTAAAAGGATAAGTAATGTGAAATGGCCTGATTCAACGGGGGAGTTAGTGAAGATGAAACTGGGTGTTCAAGACTGTGGGGGAGAATGCTTGAAGAATTGTTCTTGTTTAGCATATGGAACAGTGGGAATTCCTAAAATTGGGAGTGTCTGTGTCAATTGGTTTCACAAATTGATTGATGTTCGATATGTTCCTGATGTTGGGTCTGGAGACGATCTCTTCATCAGAGTTGCGGCTTCAGAACTAAAATCGGCCCAATCGGATGATGGAAAGCGTAATGTCGCTGAATCGGATGATGAAAAGCGTAATGTCGCTGTGGTTGTGGCTGTGCCGATCGTTTCCGTGATAATCTTTTTGGCTTTAGTCGTTGGGGGCTGCTTTCTTATTAGGAGAAGAGCTAACGGGAATGATGAAGTTGTTATAGCAGTCGTGGAGCCTCCAATTCAAGAAAATAAACTTGAGATGCCTATTGGTGTTGTTGAAGCTGCTACGGAAAATTTTTCATTTTCTAACAAGATAGGAGAGGGTGGTTTTGGACCTGTTTATAAGGGAAAGCTTCCAAGCGGGCAAGAAATAGCAGTAAAAAAACTAGCAGAAAGATCAGGTCAAGGGTTGCAAGAATTCAAAAATGAAGTAATTTTTATTTCTCAACTTCAACATCGAAATCTTGTGAAGCTTCTTGGTTATTGCATCCACCAGGAAGAAATATTACTGATCTATGAGTACTTGCCAAACAAAAGTTTGGACTGCTTCCTTTTTGTAGATGATCAAAGGCGTTCTATACTTAAGTGGCCGAAGAGAATTGATATCATAATAGGCATAGCTCGAGGACTTCTATATCTTCATCAAGATTCGAGACTTAGAATAATACACAGAGATCTTAAAGCAGCTAATATTCTGTTGGATAGTGAAATGAAACCGAAAATTTCAGACTTTGGCATGGCACGCATATTTGGTGAAGATCAAACAGAAACAAAAACAAGAAGGGTTGTTGGAACTTATGGATATATGCCTCCAGAATATGCAATCGACGGTTTCTTTTCAGTAAAGTCAGATGTTTTCAGCTTTGGAGTTGTGGTTTTAGAGATAGTTAGTGGCAGGAAGAACAAAGGTTTTTTTCATCCAGAGCATCAACTAAATCTTCTTGGACATGCATGGAAACTTTGGAAAGAAGGAAGGGCATTGGAGTTCATCGATATAATGTTGGAGGATGAATACGACAAACACGAAGCTTTAAGATATATAAATATTGGGTTGCTATGTGTTCAAAGTCGTCCAGAAGAAAGGCCAACTATGTCAACTGTGTTTTCTATGTTAGAGAATGAAAAAATGCAACTAATACTTCCTCAACGACCTGGATTCTATGAGGAAAGGTTTATAGTATCTGATATTCATTCATCATCTAGCGATCACCATGCATCCTCGATCAATAATGTTACCGTAACATTGCTACAAGGTCGTTAG 2466 39.42 MENSLSFLFFFTLILLFPQKSIADDRIKQHQSINDTQLIVSAAQIFELGFFNEPKPSNLRYLGIWYKGIPDVVVWVANRDNPILNSSATLTFNGDGNLVLINQSGFHFWSSNSTRSIQNPIAQLLDTGNLVLRDSNSGSENYEWQSFDYPSDTLLPGMKVGWDSKTGLNRKLTSWRSPNNPSSGEFSFSINTDGLPQFLVSKRNKTLYRGWPWYDHDFGQGYGNGFDYNLVFNTSMEISFSYNYSATSRTRIVMDSSGSVNRYVWSDVGEEWRNEFTFNGAGCNDYDLCGDFGICDAVVTATCGCLDGFKPISTQNFSNGCVRKDQNICKVGDGFKRISNVKWPDSTGELVKMKLGVQDCGGECLKNCSCLAYGTVGIPKIGSVCVNWFHKLIDVRYVPDVGSGDDLFIRVAASELKSAQSDDGKRNVAESDDEKRNVAVVVAVPIVSVIIFLALVVGGCFLIRRRANGNDEVVIAVVEPPIQENKLEMPIGVVEAATENFSFSNKIGEGGFGPVYKGKLPSGQEIAVKKLAERSGQGLQEFKNEVIFISQLQHRNLVKLLGYCIHQEEILLIYEYLPNKSLDCFLFVDDQRRSILKWPKRIDIIIGIARGLLYLHQDSRLRIIHRDLKAANILLDSEMKPKISDFGMARIFGEDQTETKTRRVVGTYGYMPPEYAIDGFFSVKSDVFSFGVVVLEIVSGRKNKGFFHPEHQLNLLGHAWKLWKEGRALEFIDIMLEDEYDKHEALRYINIGLLCVQSRPEERPTMSTVFSMLENEKMQLILPQRPGFYEERFIVSDIHSSSSDHHASSINNVTVTLLQGR 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21991983 21995487 + MELO3C002537.2.1 Cme12g01416 344633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01416 821 Pfam Protein tyrosine and serine/threonine kinase 502 772 IPR001245 GO:0004672|GO:0006468
Cme12g01416 821 Gene3D Phosphorylase Kinase; domain 1 466 576 - -
Cme12g01416 821 CDD STKc_IRAK 507 775 - -
Cme12g01416 821 PIRSF SRK 1 821 IPR024171 GO:0004674
Cme12g01416 821 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 819 - -
Cme12g01416 821 CDD B_lectin 31 150 IPR001480 -
Cme12g01416 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Cme12g01416 821 ProSiteProfiles PAN/Apple domain profile. 329 412 IPR003609 -
Cme12g01416 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Cme12g01416 821 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Cme12g01416 821 Gene3D Transferase(Phosphotransferase) domain 1 577 783 - -
Cme12g01416 821 SMART serkin_6 501 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01416 821 Pfam S-locus glycoprotein domain 226 311 IPR000858 GO:0048544
Cme12g01416 821 ProSiteProfiles Protein kinase domain profile. 501 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01416 821 Pfam D-mannose binding lectin 73 176 IPR001480 -
Cme12g01416 821 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 819 - -
Cme12g01416 821 SUPERFAMILY Protein kinase-like (PK-like) 489 803 IPR011009 -
Cme12g01416 821 SMART blect_4 30 150 IPR001480 -
Cme12g01416 821 Pfam PAN-like domain 329 395 IPR003609 -
Cme12g01416 821 Gene3D - 20 147 IPR036426 -
Cme12g01416 821 CDD PAN_AP_plant 330 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01414 Cme-Chr12:21977385 Cme12g01416 Cme-Chr12:21991983 0 dispersed
Cme12g01416 Cme-Chr12:21991983 Cme12g01425 Cme-Chr12:22035451 0 dispersed
Cme12g01415 Cme-Chr12:21981032 Cme12g01416 Cme-Chr12:21991983 0 tandem
Cme12g01416 Cme-Chr12:21991983 Cme12g01417 Cme-Chr12:22003631 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65323 PF07714 PK_Tyr_Ser-Thr 1.30E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01416 - - csv:101215224 1534.62