Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01417 ATGGGAGAACTGATTAGCAAGTGCAAGCTTTCGGCTTTTCTTTTTCTCTTGACGACCATAGCTCTGTTTCCAACGAAATCACATGGAAAAGACAGCATAAAAGCAGGGGAATCCATCAATGGTAGTACCCAGATTTTAGTTTCAGCAAAAAAGAACTTTGTATTGGGAATCTTCACTCCCCAAGGCTCCAAGTTTCAGTATTTGGGAATATGGTTCAACAACATCCCACAAACTATCGTGTGGGTCGCAAACAGAGACAACCCAATTGTAAATTCCACTGGAAGATTAGAATTCAGAAGAGGAAATATTGTTCTTCTCAACGAAGCAGATGGAATTTTATGGTCTTCCATTTCTCTAGGAACAACGAAAGATCCAGTAGCTCAACTGTTAGATACAGGTAATTGGGTCGTAAGAGAATCTGGGTCTGAAGATTATGTGTGGCAGAGTTTCGATTACCCCTCCGATACTCTGTTACCGGGCATGAAACTGGGTTGGAGCTCCAACACTGGCCTGAACCGGAAGTTAAGATCGTGGAAAAGCTTAAACGATCCGTCGTTTGGGGATTTCACATACAGTGTGGACCTAAATGGACTTCCCCAATTAGTAACTCGCAAAGGACCCATCATAACTTACCGGGGCGGCCCATGGTACGGTAATAGGTTTAGCGGTAGTGCTCCTCTCAGAGATACCGCAGTTTATTCACCAAAGTTTGAATATTCCGCCGACGAAGTAACTTATTCAATCGTTACGACGAGTAGTCTCATTGTAAAGCTTGGATTGGACGCAGCTGGAATATTGCACCAAACTTATTGGGATGATGGTAGAAAAGATTGGTATCCTCTGTATACATTGCCAGGGGACCGTTGCGATGACTATGGACTATGCGGGAATTTTGGTATTTGTACATTTTCCCTTACTCCACAATGCAATTGTATGGTTGGGTTTGAACCTAAATCGCCTGATGATTGGAGAAGGTTTAGATGGTCAGATGGGTGCGTTAGAAAGGACAATCAAATCTGTGGAAATGGAGAAGGGTTTAAAAGAATCCGTAGTGTGAAATTGCCAGATTCTTCAGGGTATTTGGTAAATGTTAATACAAGCATTAATGATTGTGAGGCGGCGTGTTTAAACAACTGCTCTTGCTTCGCCTATGGAATTATGGAGCTTTCTGCAGGCGGCTATGGCTGTGTCACTTGGTTTGAGAAATTGATTGATGCTAGATTTGTTCCTGAAAATGGACAGGATATCTATGTGAGAGTGGCAGCTTCTGAATTAGACTCGAGCAATAGGAAGGTTGTACTTGCCGTTAGTGTGTCTGTGGCTTCATTGGTAGGCTTCTTGGTTTTAGTGGTTTGTTTAATCCTGTGGCGTAGAAGAAAAGTTAAAGTCACTGCAGGTGAAGTTCAAAGTCTAGAGAATGAAGTTGAGATGCCACTCTATGATTTTACAACGATTGAGATTGCCACAAATCATTTTTCCTTTTCCAATAAGATAGGGGAAGGTGGCTTTGGTCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAATTGCAGTAAAAAGGTTGGCAGAGGGATCTGGTCAAGGACAAAGCGAGTTCAAGAATGAGATTTTATTGATTTCTCAACTTCAACATCGAAATCTTGTCAAGCTACTTGGTTTCTGCATTCATCATGAAGAAACATTACTGGTTTATGAATACATGCCTAACAAAAGTCTAGACTACTTCCTCTTTGATGATGAAAGGCGATCTTTACTCAATTGGCAAAAGAGACTGGACATTATAATTGGAATAGCTCGAGGGCTTCTTTATCTTCATAGAGATTCTAGACTCAGAATCATACATCGAGATCTTAAAGTGAGTAATATATTACTAGATAATGAAATGAATCCAAAGATTTCAGATTTTGGAATGGCACGCATGTTTCCTGAGGACCAAACTATGACAAAAACCCAAAGAGTTGTTGGGACCTTTGGCTATATGTCTCCCGAATATGCACTCGATGGATGTTTTTCGTTGAAATCAGATGTTTTTAGCTTTGGAGTTATTCTTTTGGAAATAATAAGTGGTAAGAAGAATAGAGGGTTCTTCCATACTGATCATCAACTTAATCTTCTTGGACATGCATGGAAGCTTTGGGATGAAGGGAATGCTTTGGAATTAATGGATGCAAAATTGAAGGATCAATTCCAACCTTCTGAAGCACTGAGATGTATTCAAGTAGGGCTTTTATGTGTTCAACAGGATCCAAATGAGAGACCAACTATGTGGTCAGTACTTACAATGTTAGAAAGTGAAAATACGTTATTATCTCATCCTCAACGACCTGGATTTTACACTGAACGAATGGTTTTGAAGACGGATAAATCGACGACGACTGATATCTCTTCTTCCAATGAAGTAACCGTTACTTTACTACATGGTCGTTAG 2430 40.45 MGELISKCKLSAFLFLLTTIALFPTKSHGKDSIKAGESINGSTQILVSAKKNFVLGIFTPQGSKFQYLGIWFNNIPQTIVWVANRDNPIVNSTGRLEFRRGNIVLLNEADGILWSSISLGTTKDPVAQLLDTGNWVVRESGSEDYVWQSFDYPSDTLLPGMKLGWSSNTGLNRKLRSWKSLNDPSFGDFTYSVDLNGLPQLVTRKGPIITYRGGPWYGNRFSGSAPLRDTAVYSPKFEYSADEVTYSIVTTSSLIVKLGLDAAGILHQTYWDDGRKDWYPLYTLPGDRCDDYGLCGNFGICTFSLTPQCNCMVGFEPKSPDDWRRFRWSDGCVRKDNQICGNGEGFKRIRSVKLPDSSGYLVNVNTSINDCEAACLNNCSCFAYGIMELSAGGYGCVTWFEKLIDARFVPENGQDIYVRVAASELDSSNRKVVLAVSVSVASLVGFLVLVVCLILWRRRKVKVTAGEVQSLENEVEMPLYDFTTIEIATNHFSFSNKIGEGGFGPVYKGKLPCGQEIAVKRLAEGSGQGQSEFKNEILLISQLQHRNLVKLLGFCIHHEETLLVYEYMPNKSLDYFLFDDERRSLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMNPKISDFGMARMFPEDQTMTKTQRVVGTFGYMSPEYALDGCFSLKSDVFSFGVILLEIISGKKNRGFFHTDHQLNLLGHAWKLWDEGNALELMDAKLKDQFQPSEALRCIQVGLLCVQQDPNERPTMWSVLTMLESENTLLSHPQRPGFYTERMVLKTDKSTTTDISSSNEVTVTLLHGR 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22003631 22007112 - MELO3C002535.2.1 Cme12g01417 344634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01417 809 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 23 807 - -
Cme12g01417 809 SMART ntp_6 341 420 IPR003609 -
Cme12g01417 809 Gene3D Phosphorylase Kinase; domain 1 455 567 - -
Cme12g01417 809 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Cme12g01417 809 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Cme12g01417 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 184 IPR036426 -
Cme12g01417 809 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 807 - -
Cme12g01417 809 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Cme12g01417 809 PIRSF SRK 3 809 IPR024171 GO:0004674
Cme12g01417 809 Pfam D-mannose binding lectin 78 179 IPR001480 -
Cme12g01417 809 SUPERFAMILY Protein kinase-like (PK-like) 476 784 IPR011009 -
Cme12g01417 809 CDD STKc_IRAK 498 764 - -
Cme12g01417 809 Pfam PAN-like domain 340 405 IPR003609 -
Cme12g01417 809 Pfam Protein tyrosine and serine/threonine kinase 493 761 IPR001245 GO:0004672|GO:0006468
Cme12g01417 809 SMART serkin_6 492 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01417 809 ProSiteProfiles Protein kinase domain profile. 492 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01417 809 CDD B_lectin 39 153 IPR001480 -
Cme12g01417 809 Gene3D - 26 150 IPR036426 -
Cme12g01417 809 Gene3D Transferase(Phosphotransferase) domain 1 568 774 - -
Cme12g01417 809 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Cme12g01417 809 CDD PAN_AP_plant 337 421 - -
Cme12g01417 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Cme12g01417 809 SMART blect_4 37 153 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02050 Cme-Chr6:25849332 Cme12g01417 Cme-Chr12:22003631 0 dispersed
Cme12g01411 Cme-Chr12:21964354 Cme12g01417 Cme-Chr12:22003631 0 dispersed
Cme12g01412 Cme-Chr12:21968776 Cme12g01417 Cme-Chr12:22003631 0 dispersed
Cme12g01417 Cme-Chr12:22003631 Cme12g01425 Cme-Chr12:22035451 0 dispersed
Cme12g01423 Cme-Chr12:22028998 Cme12g01417 Cme-Chr12:22003631 8.50E-83 dispersed
Cme12g01428 Cme-Chr12:22054613 Cme12g01417 Cme-Chr12:22003631 0 dispersed
Cme12g01459 Cme-Chr12:22307652 Cme12g01417 Cme-Chr12:22003631 9.93E-24 dispersed
Cme12g01416 Cme-Chr12:21991983 Cme12g01417 Cme-Chr12:22003631 0 tandem
Cme12g01417 Cme-Chr12:22003631 Cme12g01418 Cme-Chr12:22009954 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65324 PF07714 PK_Tyr_Ser-Thr 2.60E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01417 - - csv:105434437 1550.8