Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01419 ATGGCAAAACTGATTTCCATTGTTCTGTTTTTTTGGACGACCATCGCTCTGTTTCCAAGAAAATCATTAGCAGTTGATAGCATAAAAGCAGGGGAATCCATGAGTGGTAGTGCCCAGATATTAGTTTCAGCTCAACAGAAGTTTGTGTTGGGAATCTTTAATCCCGAAGGCTCCAAATTTAAATATTTGGGAATATGGTACAAGAACATCCCACAGATGACTATCGTATGGGTTGCAAACAGAGACAACCCATTTGTAAGTTCCTCTGCCAAATTAACATTCAATGAAGAAGGAAACATTATTCTTATGGATGAAACAGATGGAGTTTTATGGTCTTCCACTTCTTCAGTATACGTGAAAGAACCGGTTGTTCAACTACTAGATAACGGTAATTTGGTATTAGGAGAATCTGAGTCTGGAAATTATGTGTGGCAGAGTTTCGATTATGTCACTGACACTCTATTACCCGGCATGAAACTGGGTCGAGACTCGAAAGCGGGTATGAACTGGAAGTTAACGTCATGGAAAAGCCGGAACGATCCCTCCTCTGGGGATTTCACTTATGTTATGGACCCTGGAGGGCTTCCCCAGCTTGAAATTCATAGAGGAAACTTCACAACGTACAGGAGCGGACCCTATTTGGGTAGTAGGTTTAGTGGCGGTTACTACCTTAGAGAAACGGCAATTATAACTCCACGGTTCGTTTATAATGCGAATGAAGCATTCTATTCATACGAGTCTGCGAAAAATCTCGCTGTCAGATATACACTGAACGCAGAAGGCTACTTCAACCTATTTCATTGGAACGATGATGGAAATTATTGGCAGAGTTTGTTCAAGTCACCAGGAGACGCCTGCGATGACTACGGACACTGCGGAAATTTTGGTATTTGTACATTTTCTGTCATAGCTATATGCGATTGCATTCCTGGGTTTCAACCAAAATCGCCAGATGATTGGGAAAAGCAAGGCAGCTCTGGTGGGTGCGTTAGAAGGGACAATAAGACCTGCAAAAATGGAGAGGGGTTTAAAAGAATCAGCAATGTGAAATTACCAGATTCTTCTGCGAAGAATTTGGTTAAGCTTAATACAAGCATTCAAGACTGCAAAGCGGCGTGCTTGAGTGATTGCTCTTGCTTGGCCTATGGAAGGATGGAGTTTTCCACAGGAGAAAATGGCTGCATCACATGGTTTGAGAGATTGGTGGATATGAAAATCCTTCCTCAAAATGGACAGGATATCTATGTAAGGTTGGCTGCTTCAGAATTAGAATCGTCTAAAAGGAAGCTTATAGTTGGGCTGAGTGTGTCTGTTGCTTCACTGATAAGCTTCTTGATTTTTGTTGCTTGCTTTATCTATTGGCGTAGAAGGAGGGCTGAGGGTAATGAGGTTGAGGCTCAAGACGACGAAGTTGAGTTGCCACTCTATGATTTTACAAAGATCGAGACTGCCACGAATAATTTTTCTTTGTCAAATAAGATTGGCGAAGGTGGTTTCGGTCCTGTGTACAAAGGAATGCTTCCATGTGGACAAGAAATTGCAGTAAAAAGACTGGCAGAGGACTCAAGCCAAGGGCAAACCGAGCTAAGAAACGAGGTTCTATTGATCTCCAAACTCCAACATCGTAATCTCGTCAAGCTACTTGATGACAAGAAGCGATCTTTACTCAGTTGGAAAAAGAGGATGGATATTATAATTGGAATAGCTAGAGGTCTCCTCTATCTCCACCGAGATTCAAGGCTTATAATTATACATAGAGATCTCAAAGTGAGTAACATCTTACTGGATAACGAAATGAATCCAAGAATTTCGGACTTTGGTTTGGCTCGCATTGGCTATATGTCTCCTGAATATGTAATCGACGGATACTTTTCAATGAAATCAGATATCTTCAGCTTTGGAGTTATTCTTTTAGAAATAATTAGTGGTAAGAAGAACAGAGGCTTCTTTCATCCTGACCATCAACTAAATCTTCTTGGACATTGTGAAAATTTGTCAAGTATGGAAACTAACTTGAAGGATCACCAGGCATGGAAACTTTGGGATGAAGGCAATGCTTTGGAATTAATGGATGAGACATTGAAGGATCAATTCCAAAACTCTGAAGCCCAACGATGCATTCAAGTAGGACTTTTGTGCGTTCAAGAGAATCCTAATGAAAGGCCAACTATGTGGTCAGTACTTTCAATGTTAGAGAGTGAAAATATGGCATTATCTCTACCAAAACAACCTGGATTTTACACAGAAAGAATTATTTCTAAGACCCATAATTTACCAGATGAAGCCTCTTGTAGTACCAATGAAGTGACCGTTACACTGTTGGATGGTCGCTAG 2334 40.83 MAKLISIVLFFWTTIALFPRKSLAVDSIKAGESMSGSAQILVSAQQKFVLGIFNPEGSKFKYLGIWYKNIPQMTIVWVANRDNPFVSSSAKLTFNEEGNIILMDETDGVLWSSTSSVYVKEPVVQLLDNGNLVLGESESGNYVWQSFDYVTDTLLPGMKLGRDSKAGMNWKLTSWKSRNDPSSGDFTYVMDPGGLPQLEIHRGNFTTYRSGPYLGSRFSGGYYLRETAIITPRFVYNANEAFYSYESAKNLAVRYTLNAEGYFNLFHWNDDGNYWQSLFKSPGDACDDYGHCGNFGICTFSVIAICDCIPGFQPKSPDDWEKQGSSGGCVRRDNKTCKNGEGFKRISNVKLPDSSAKNLVKLNTSIQDCKAACLSDCSCLAYGRMEFSTGENGCITWFERLVDMKILPQNGQDIYVRLAASELESSKRKLIVGLSVSVASLISFLIFVACFIYWRRRRAEGNEVEAQDDEVELPLYDFTKIETATNNFSLSNKIGEGGFGPVYKGMLPCGQEIAVKRLAEDSSQGQTELRNEVLLISKLQHRNLVKLLDDKKRSLLSWKKRMDIIIGIARGLLYLHRDSRLIIIHRDLKVSNILLDNEMNPRISDFGLARIGYMSPEYVIDGYFSMKSDIFSFGVILLEIISGKKNRGFFHPDHQLNLLGHCENLSSMETNLKDHQAWKLWDEGNALELMDETLKDQFQNSEAQRCIQVGLLCVQENPNERPTMWSVLSMLESENMALSLPKQPGFYTERIISKTHNLPDEASCSTNEVTVTLLDGR 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22016954 22020180 + MELO3C002532.2.1 Cme12g01419 344636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01419 777 SMART serkin_6 488 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01419 777 Pfam Protein kinase domain 555 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01419 777 ProSiteProfiles EGF-like domain profile. 282 318 IPR000742 -
Cme12g01419 777 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 17 548 - -
Cme12g01419 777 ProSiteProfiles Protein kinase domain profile. 488 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01419 777 Gene3D - 22 148 IPR036426 -
Cme12g01419 777 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Cme12g01419 777 Pfam Domain of unknown function (DUF3403) 733 777 IPR021820 GO:0004674
Cme12g01419 777 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 547 775 - -
Cme12g01419 777 CDD PAN_AP_plant 334 419 - -
Cme12g01419 777 Gene3D Transferase(Phosphotransferase) domain 1 546 740 - -
Cme12g01419 777 Gene3D Hepatocyte Growth Factor 333 420 - -
Cme12g01419 777 SMART blect_4 32 150 IPR001480 -
Cme12g01419 777 CDD B_lectin 35 149 IPR001480 -
Cme12g01419 777 Pfam PAN-like domain 337 404 IPR003609 -
Cme12g01419 777 Pfam D-mannose binding lectin 74 176 IPR001480 -
Cme12g01419 777 Pfam Protein tyrosine and serine/threonine kinase 489 548 IPR001245 GO:0004672|GO:0006468
Cme12g01419 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Cme12g01419 777 PIRSF SRK 1 549 IPR024171 GO:0004674
Cme12g01419 777 PIRSF SRK 547 777 IPR024171 GO:0004674
Cme12g01419 777 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 548 - -
Cme12g01419 777 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Cme12g01419 777 SMART ntp_6 338 418 IPR003609 -
Cme12g01419 777 ProSiteProfiles PAN/Apple domain profile. 337 419 IPR003609 -
Cme12g01419 777 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 547 775 - -
Cme12g01419 777 Gene3D Phosphorylase Kinase; domain 1 451 545 - -
Cme12g01419 777 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 181 IPR036426 -
Cme12g01419 777 SUPERFAMILY Protein kinase-like (PK-like) 471 751 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01419 Cme-Chr12:22016954 Cme12g01422 Cme-Chr12:22024773 0 dispersed
Cme12g01421 Cme-Chr12:22021676 Cme12g01419 Cme-Chr12:22016954 1.14E-55 dispersed
Cme12g01418 Cme-Chr12:22009954 Cme12g01419 Cme-Chr12:22016954 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65326 PF07714 PK_Tyr_Ser-Thr 2.10E-19 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01419 - - csv:101214745 1371.3