Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01422 ATGGGAAAACTGATTTGGAGATGCGGGGTTTCGATTTTTCTGTTGTTCTGGGCGATTATGGGTGTGTTTCCAAGAAAATCATTTGCAATTGACAGCATAAAAGCAGGGGAATCCATCAATGGCAGTAACCAAATATTAGTTTCAGCTCAACAGAAGTTTGAGCTGGGAATTTTCAATCCTAAAGACTCCAAATTTTACTACTTGGGAATATGGTACAGGAACATCTCACAAACGGTTGTGTGGGTAGCAAACAGAGACAACCCAGTTGTAAATTCCTCTGCCAGATTAACACTCAAAGGACAAAGCCTGGTTCTTCAGGATGAAAGCGATGCAATTCTATGGTCTTCCACTTCTTCAGAAATTGTTAAGGAACCAGTTGCTCAACTACTAGATAATGGTAATTTGGTTATAAGAGAATCCGGGTCTGAAAATTATGTGTGGCAGAGTTTTGATTACCCTTCTGATACTCTGTTACCGGGCATGAAACTCGGTTGGGACTCAAAAACCGGTATGAACTGGAAGTTAACGTCATGGAAAAGCTTGAACGATCCGTCATCTGGGGATTTCACTTTTGGTATGGACCCTGATGGACTTCCCCAGTTTGAAACTCGCAGTGGAAACATCACAACGTACAGGGATGCCCCATGGTTCGGTAATAGGTTTAGTCGCAGTTCTGTTTTTAGAGAAGTGGCAATTACTTCACCACAGTTCAATTATAATGCGGAAGGAGCATTCTTTTCATACGAGTCTACAAAAAATCTTACTGTAAGATATGCACTGCACGCAGAAGGCTACTTCGAACTATTGTATTGGATGGATGATGCAAATGATTGGTACAGTTTGTCTTCATTTCCAGGAGATACTTGTGATGACTACGGAAGCTGCGGAAATTTTGGTCTTTGTACACTTTCCGTCGCAGCTCTCTGTGATTGCGTTTATGGGTATCGACCAAAATTGCCAGATGATTGGGGAAAGCATAGCTGGTCAGGTGGCTGCGTTATAAGAGACAATCGAACCTGCGAAAATGGAGAGGGGTTTAAAAGAATCAGCAACGTGAAATGGCCAGATTCTTCAGGCGATTTGGTGAATGTCGATGTGAGCTTTCATGACTGCGAAGCGGCATGCTTGAGTAATTGCTCTTGCTTGGCCTATGGAATAATGGAGCTTCCCACTGGCGGCAGTGGCTGCATCACATGGTTTAAGAAGTTGGTGGATATTAGGATCTTTCCTGATTATGGACAGGATATCTATGTGAGACTGGCTGCTTCAGAATTAAATGTAACTGCAAAGCCTTCAGAATCAGGTAATGAGGTTGAGGCTCAAGAGGACGAAGTTGAGTTGCCACTCTATGATTTTAGGAAGATTGAGACCGCCACAAATTATTTTTCTTTTTCAAATAAGATTGGAGAAGGTGGTTTCGGTCCTGTGTACAAAGGAATGCTTCCACGTGGACAAGAAATTGCAGTAAAAAGACTGGCAGAGGACTCAAGCCAAGGGCAAACCGAGCTAAGAAACGAGGTTCTATTGATCTCCAAACTCCAACATCGTAACCTCGTCAAGCTACTTGGTTTCTGCATTCATCAACAAGAAACATTGCTGGTCTATGAATATATGCCAAACAAAAGTCTAGACTATTTTCTCTTTGATGACAAGAAGCGAACTTTACTTAGTTGGAAAAAGAGGTTAGATATTATAATTGGAATAGCTCGAGGTCTTCTCTATCTCCATCGAGATTCAAGGCTTATAATTATACATAGGGATCTCAAAGTGAGTAACATCTTACTAGATAACGAAATGAATCCAAAAATTTCGGACTTTGGTTTGGCTCGCATGTTTGGTGAAGACCAAATTATGACACGAACTAAAAGAGTTGTTGGGACCTATGGCTATATGTCTCCGGAATATGCAATCGACGGATATTTTTCAATGAAATCAGATATCTTCAGCTTTGGAGTTATTCTTTTAGAACTAGTTAGTGGTAAGAAGAACAGGGGCTTCTTTCATGCTGACCATCAACTAAATCTTCTTGGACATGCATGGAAACTTTGGGATGAAGGCAATGCTTTGGAATTAATGGATGAAACATTGAAGGATCAATTCCAAAACTCTGAAGCCCAGCGATGCATTCAAGTAGGACTTTTGTGCGTTCAAGAGAACCCTGATGAAAGGCCAGCTATGTGGTCTGTACTTTCAATGTTAGAGAGTGAAAGTATGGCATTATCTCTACCTAAACAACCTGGATTTTACACAGAAAGAATTATTTCTAAGACCCATAATTTACCAGTTGAAGCCTCTTGTACTACCAATAAAGTGACCGTTACTCTGCTGGATGGTCGTTAG 2340 41.07 MGKLIWRCGVSIFLLFWAIMGVFPRKSFAIDSIKAGESINGSNQILVSAQQKFELGIFNPKDSKFYYLGIWYRNISQTVVWVANRDNPVVNSSARLTLKGQSLVLQDESDAILWSSTSSEIVKEPVAQLLDNGNLVIRESGSENYVWQSFDYPSDTLLPGMKLGWDSKTGMNWKLTSWKSLNDPSSGDFTFGMDPDGLPQFETRSGNITTYRDAPWFGNRFSRSSVFREVAITSPQFNYNAEGAFFSYESTKNLTVRYALHAEGYFELLYWMDDANDWYSLSSFPGDTCDDYGSCGNFGLCTLSVAALCDCVYGYRPKLPDDWGKHSWSGGCVIRDNRTCENGEGFKRISNVKWPDSSGDLVNVDVSFHDCEAACLSNCSCLAYGIMELPTGGSGCITWFKKLVDIRIFPDYGQDIYVRLAASELNVTAKPSESGNEVEAQEDEVELPLYDFRKIETATNYFSFSNKIGEGGFGPVYKGMLPRGQEIAVKRLAEDSSQGQTELRNEVLLISKLQHRNLVKLLGFCIHQQETLLVYEYMPNKSLDYFLFDDKKRTLLSWKKRLDIIIGIARGLLYLHRDSRLIIIHRDLKVSNILLDNEMNPKISDFGLARMFGEDQIMTRTKRVVGTYGYMSPEYAIDGYFSMKSDIFSFGVILLELVSGKKNRGFFHADHQLNLLGHAWKLWDEGNALELMDETLKDQFQNSEAQRCIQVGLLCVQENPDERPAMWSVLSMLESESMALSLPKQPGFYTERIISKTHNLPVEASCTTNKVTVTLLDGR 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22024773 22028148 - MELO3C002530.2.1 Cme12g01422 344639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01422 779 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 437 777 - -
Cme12g01422 779 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 22 432 - -
Cme12g01422 779 CDD STKc_IRAK 468 734 - -
Cme12g01422 779 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Cme12g01422 779 Pfam Protein tyrosine and serine/threonine kinase 463 732 IPR001245 GO:0004672|GO:0006468
Cme12g01422 779 Gene3D Phosphorylase Kinase; domain 1 422 537 - -
Cme12g01422 779 SMART blect_4 37 153 IPR001480 -
Cme12g01422 779 Pfam S-locus glycoprotein domain 211 318 IPR000858 GO:0048544
Cme12g01422 779 Pfam Domain of unknown function (DUF3403) 735 779 IPR021820 GO:0004674
Cme12g01422 779 Gene3D Transferase(Phosphotransferase) domain 1 538 743 - -
Cme12g01422 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Cme12g01422 779 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 184 IPR036426 -
Cme12g01422 779 SMART ntp_6 341 420 IPR003609 -
Cme12g01422 779 SUPERFAMILY Protein kinase-like (PK-like) 445 750 IPR011009 -
Cme12g01422 779 SMART serkin_6 462 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01422 779 CDD B_lectin 39 153 IPR001480 -
Cme12g01422 779 Gene3D - 27 150 IPR036426 -
Cme12g01422 779 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 437 777 - -
Cme12g01422 779 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 432 - -
Cme12g01422 779 PIRSF SRK 427 779 IPR024171 GO:0004674
Cme12g01422 779 PIRSF SRK 3 440 IPR024171 GO:0004674
Cme12g01422 779 Pfam PAN-like domain 340 406 IPR003609 -
Cme12g01422 779 CDD PAN_AP_plant 337 421 - -
Cme12g01422 779 Pfam D-mannose binding lectin 78 179 IPR001480 -
Cme12g01422 779 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Cme12g01422 779 ProSiteProfiles Protein kinase domain profile. 462 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01422 779 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01418 Cme-Chr12:22009954 Cme12g01422 Cme-Chr12:22024773 0 dispersed
Cme12g01419 Cme-Chr12:22016954 Cme12g01422 Cme-Chr12:22024773 0 dispersed
Cme12g01422 Cme-Chr12:22024773 Cme12g01425 Cme-Chr12:22035451 0 dispersed
Cme12g01421 Cme-Chr12:22021676 Cme12g01422 Cme-Chr12:22024773 8.25E-58 tandem
Cme12g01422 Cme-Chr12:22024773 Cme12g01423 Cme-Chr12:22028998 3.44E-59 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65327 PF07714 PK_Tyr_Ser-Thr 1.90E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01422 - - csv:105435152 1286.55