Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01425 ATGGGAGAACGGATTTGCTGGTGCAGCAAGCTTTTAGCTTTTCTAATTTTTTGGAGAACCATAGCTCTGTTTCCAAGAAAATCATCAGCAATCGATACTATAAAAGCAGGGGAATTCATAATTGGCAGCACCCAGATATTAGTTTCATCTCAAGAGAACTTCGTATTGGGAATCTTCAATCCTCAAGGCTCCAGATTTCAGTACTTAGGAATATGGTACAAGAACAACCCACAGACAATCGTATGGGTAGCAAACAGAGACAACCCACTTGTAAACTCCTCTGCCAAATTAACAGTCAACGTAGAAGGAACCATCATTCTTCTCAACGAAACAGGTGGAGTTTTATGGTCTTCCCCGTCTCCAGGATCCATGAAACTACCCACAGCTCAGCTGCTAAACACAGGTAATTTGGTCGTAACCGAATCTGGGTCAGAGAATTATTTGTGGCAGAGTTTTGATTACCCATCTGATACTCTGTTAACGGGAATGAAACTGGGTTGGGACTCAAAATCCGGTCTAAACCGGAAGTTAACGTCTTGGAAAAGCGCAAACGATCCGTCGCCTGGGGGTTTCACTTACAGCATTGAAACAGATGGGCTTCCCCAATTTGTAATTCGCGAAGGACCTCTCATACTTTTTCGAGGTGGCCCATGGTACGGTAATAGGTTTAGTGGAAGCGGTGCACTCAGAGATACCGCTATCTATTCCCCGAAGTTCGATTATAATGCTTCCGCAGCTTTATTTTCCTATGATGCTGCGGATAATCTCTTTGTGAGACTTACACTGAACGCGGCTGGGTATGTTCAACAGTTTTATTGGGTCGATGATGGAAAATATTGGAATCCTTTGTATATAATGCCGGGAGATCGATGCGATGTTTATGGACTGTGTGGGGATTTTAGTGTTTGTACGTTTTCACTCACAGCAGAATGTGATTGTATGGTTGGGTTTGAACCCAAGTCACCTAATGATTGGGAAAGGTTTAGATGGTCTGATGGGTGCGTTAGAAAGGACAATCGAACCTGTAGAAATGGAGAGGGGTTTAAAAGAATCAGTAGTGTGAAATTGCCAGATTCCTCAGGGTATTTGGTGAATGTTAATACAAGTATTGATGATTGTGAAGCTGCGTGTTTAAACAACTGCTCTTGCTTGGCTTATGGAATAATGGAGCTTCCAACAGGCGGCTATGGATGTGTTACTTGGTTTCATAAACTGGTGGATGTTAAATTCGTTCTGGAAAATGGACAGGATCTCTATATAAGAGTGGCAGCTTCAGAACTAGACACGACCAAGAAGAAGCTTTTGGTTGCAATTTTTGTGTCTGTGGCTTCATTTCTAGGCTTGTTGGCTTTTGTCATTTGCTTTATCCTTGGGCGTAGAAGGAGAGTTAGAGATAATATGATCTCTCCTGATAACTCTGAAGGTCATATTCAATCTCAAGAAAACGAAGTGGAAATGCCAATCTTTGATTTTACTACAATCGAGATAGCGACCAATGGTTTCTCTTTTTCGAATAAGATAGGGGAAGGTGGTTTTGGTCCTGTATACAAGGGGAAGCTTTCTTGTGGACAAGAGATTGCAGTAAAGAGACTGGCAGAGGGCTCTGGCCAAGGCCAAAGTGAGTTCAAAAATGAGGTTTTGTTGATTTCACAACTTCAGCATCGAAATCTTGTAAAGCTTCTTGGTTTCTGCATTCACCAAGAAGAAACATTGCTGGTCTATGAGTATATGCAAAACAAAAGTTTAGACTACTTCCTCTTCGATAATCAGAGGCGATCTTTACTCAATTGGCAAAAGAGATTGGATATCATTATTGGGATAGCTCGTGGACTACTTTATCTTCATAGAGATTCAAGGCTTAGAATAATTCATAGAGATCTCAAAGTAAGTAACATATTGCTTGACAATGAAATGACTCCAAAAATTTCAGACTTTGGTATGGCACGCATGTTTGGAGAAGGTCAAACTGTGACACAAACCAAAAGAGTTGTTGGGACCTATGGTTATATGTCTCCAGAATATGCACTCGACGGATGCTTTTCATTGAAGTCAGATGTGTTTAGCTTTGGGGTAATTCTATTGGAAATAGTCAGTGGTAAAAAGAACAGAGGCTTCTTCCATACAGATCATCAACTAAATCTTCTTGGACATGCTTGGAAGCTTTGGGATGAACAAAATGCTTTGGAGTTAATGGATACATCATTGGAGGATGAATTCCAACCTTCTGAAGCCTTGCGATGCATTCAAGTAGGACTTTTGTGTGTTCAACAGAATCCTGATGAAAGGCCGACTATGTGGTCAGTACTTTCAATGTTGGAGGGAGAGAACGTGCTCCTATATCATCCTAAACAGCCTGGATTTTACATGGAAAGAATGTTTTCTAAGCACGATAAATTATCGGCCGAAACCTCAACTTCGAATGAAGTGACAGTTACATCGCTACGTGGTCGTTAG 2454 41.2 MGERICWCSKLLAFLIFWRTIALFPRKSSAIDTIKAGEFIIGSTQILVSSQENFVLGIFNPQGSRFQYLGIWYKNNPQTIVWVANRDNPLVNSSAKLTVNVEGTIILLNETGGVLWSSPSPGSMKLPTAQLLNTGNLVVTESGSENYLWQSFDYPSDTLLTGMKLGWDSKSGLNRKLTSWKSANDPSPGGFTYSIETDGLPQFVIREGPLILFRGGPWYGNRFSGSGALRDTAIYSPKFDYNASAALFSYDAADNLFVRLTLNAAGYVQQFYWVDDGKYWNPLYIMPGDRCDVYGLCGDFSVCTFSLTAECDCMVGFEPKSPNDWERFRWSDGCVRKDNRTCRNGEGFKRISSVKLPDSSGYLVNVNTSIDDCEAACLNNCSCLAYGIMELPTGGYGCVTWFHKLVDVKFVLENGQDLYIRVAASELDTTKKKLLVAIFVSVASFLGLLAFVICFILGRRRRVRDNMISPDNSEGHIQSQENEVEMPIFDFTTIEIATNGFSFSNKIGEGGFGPVYKGKLSCGQEIAVKRLAEGSGQGQSEFKNEVLLISQLQHRNLVKLLGFCIHQEETLLVYEYMQNKSLDYFLFDNQRRSLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMTPKISDFGMARMFGEGQTVTQTKRVVGTYGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTDHQLNLLGHAWKLWDEQNALELMDTSLEDEFQPSEALRCIQVGLLCVQQNPDERPTMWSVLSMLEGENVLLYHPKQPGFYMERMFSKHDKLSAETSTSNEVTVTSLRGR 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22035451 22039235 + MELO3C002527.2.1 Cme12g01425 344642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01425 817 Pfam D-mannose binding lectin 79 181 IPR001480 -
Cme12g01425 817 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Cme12g01425 817 SMART blect_4 38 155 IPR001480 -
Cme12g01425 817 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 23 813 - -
Cme12g01425 817 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Cme12g01425 817 Gene3D Phosphorylase Kinase; domain 1 464 576 - -
Cme12g01425 817 CDD PAN_AP_plant 339 423 - -
Cme12g01425 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Cme12g01425 817 Gene3D - 27 152 IPR036426 -
Cme12g01425 817 SMART serkin_6 501 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01425 817 SMART ntp_6 343 422 IPR003609 -
Cme12g01425 817 CDD B_lectin 40 155 IPR001480 -
Cme12g01425 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 186 IPR036426 -
Cme12g01425 817 Gene3D Transferase(Phosphotransferase) domain 1 577 779 - -
Cme12g01425 817 PIRSF SRK 4 817 IPR024171 GO:0004674
Cme12g01425 817 Pfam Protein tyrosine and serine/threonine kinase 502 771 IPR001245 GO:0004672|GO:0006468
Cme12g01425 817 CDD STKc_IRAK 507 774 - -
Cme12g01425 817 Pfam PAN-like domain 342 408 IPR003609 -
Cme12g01425 817 SUPERFAMILY Protein kinase-like (PK-like) 484 792 IPR011009 -
Cme12g01425 817 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544
Cme12g01425 817 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 813 - -
Cme12g01425 817 ProSiteProfiles Protein kinase domain profile. 501 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02682 Cme-Chr1:34258055 Cme12g01425 Cme-Chr12:22035451 2.12E-159 dispersed
Cme12g01415 Cme-Chr12:21981032 Cme12g01425 Cme-Chr12:22035451 0 dispersed
Cme12g01416 Cme-Chr12:21991983 Cme12g01425 Cme-Chr12:22035451 0 dispersed
Cme12g01417 Cme-Chr12:22003631 Cme12g01425 Cme-Chr12:22035451 0 dispersed
Cme12g01422 Cme-Chr12:22024773 Cme12g01425 Cme-Chr12:22035451 0 dispersed
Cme12g01423 Cme-Chr12:22028998 Cme12g01425 Cme-Chr12:22035451 3.10E-78 proximal
Cme12g01425 Cme-Chr12:22035451 Cme12g01428 Cme-Chr12:22054613 0 proximal
Cme04g00755 Cme-Chr4:8964045 Cme12g01425 Cme-Chr12:22035451 0 transposed
Cme01g00383 Cme-Chr1:2780613 Cme12g01425 Cme-Chr12:22035451 3.64E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65328 PF07714 PK_Tyr_Ser-Thr 6.80E-50 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01425 - - csv:105434439 1576.61