Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01428 ATGAATCCTCTTCCTCCTAAACCGGCCGTCTTCCTCCTTTTATTGTTTTCCGTCATTTTTGTTGGAACCCATTTTAGCATTGCAATTGATACTTCAAATTCTACAATTCAAATCATCAAAGATGGAGATCACTTGGTATCCACCAACAAGAATTTCACTCTTGGATTCTTCAGTCTCAACAATTCCACCACTCCCCGATATGTCGGAATTTGGTACAGTCAAATTCCTCAACGAACCATCGTTTGGGTCGCCAATAGAAACCAACCACTTAACGACACCTCAGGAACCTTCGCTCTCGACCGTCATGGAAACGTCGTACTTTTCACCCCCACACAAACCATATCTCTTTGGTCTACTAACACTACCATCCAATCAAACGACGACGTGTCGATTGAGCTTCAGAATACCGGAAATCTCGCCTTGATTGAACGACAGAGCGAAAAGGTTATATGGCAAAGCTTTGATTATCCATCTCATGTCTTTCTTCCCTACATGAAATTGGGGTTGAACCGTCAGACCGGGTTCAGCTGGTTCCTAACTTCATGGAAAGCGCTCGACAATCCGGGAACCGGGAACTTCAGTTGCCGGATAGATCCGACGGGTTATCCCCAACTGATTTTGTACAAAGGGAATGTCCCGCGATGGCGAGTAGGTTCATGGACAGGGGAGAAATGGTCTGGAGTACCTGAAATGACAAGATCGTTTATATTCAACACAACCTACATCGACAACACACAAGAGATCTCCATAACGGATGGCGTCACGGATGACACGGTTTTAACGAGCATGACTCTAGACGAATCCGGTTTGTTGCATCGGTCTACGTGGAGCGAGCAAGATAAAAAATGGAAGGATTATTGGTGGGCTCCGACCGAGTGGTGCGACACATACAATCAATGCGATCCAAACACAAACTGTGACCAGTACGACACGAAGCAGTTCTATTGCAAGTGCTTGCCTGGGTTCGAACCACGATCGAACCAGAGTTGGTTATTGAATAATCCGTCAGGTGGGTGCATTAGCAAGAGGCCTAACGCCATGTGTCGTAGTGGAGAGGGATTTGTGAAGGTGTCGCGTGTGAAGGTCCCGGATACGTCAATGGCAAGTGCAGATTTGAGTATGAGCTTAGAAGCATGCGCACAAGCATGTTTAAATGATTGTAACTGTACGGCTTACGCAAGCGCAAATGAGCTGACGGGGAGCGGGAGCGTGATGTGGCATGGAGATTTGATAGACACGCGGACCTTTGCCAACACCGGTCAAGATCTACATGTAAGAGTTGATGCTATTGAATTAGCTCAATATACACAAAATTCAAATCGTCCTTCGACAAAGAAGGTGATAGTAATTGTTGTTGTGTCTTTTGTCGCGTTGGTGTTACTCTTGACGTCGTTAGTTTATTTATGGAAAATGGCTAGAAAAAGAAGGGAGAGATCGAGGAGTTTATCTTATGATTTAGGGGACACTCTAAATCCAAATGAATTTGATGAAAGTAGAACAAACTCAGATTTACCTATATTCGACTTGTTGACCATAGCAAAGGCAACTGATGATTTTTCACTTAATAACAAGCTAGGAAAAGGTGGCTTCGGTGCAGTTTACAAGGGGAAGCTTACAAATGGAGTGGAAATAGCAGTTAAAAGGTTGGCTAAAAATTCAGGGCAAGGAGTTGAAGAGTTCAAGAATGAAGTTAATTTAATTGCAAAGCTTCAACATAGAAACCTTGTCAAAATTTTAGGTTACTGCGTTAAGAATGAAGAGAAAATGATTGTGTATGAATACTTGCCAAACAAAAGCTTGGACACTTTCATCTTTGATGATAGCAAGAGAGCTTTGCTCAACTGGAAAAAACGTTTTGAAATTCTACGTGGCATTGCACGAGGGATTCTATACCTTCATCAAGATTCGAGGTTGAAAATCATTCATCGAGATTTGAAGACAAGTAATATATTATTGGATGTTGATTTAAATCCCAAAATCGCAGATTTTGGTATGGCAAGAATATTTGGCCAAGATCAAAATCAAGCAAACACTAATCGTATTGTAGGAACATACGGTTATATGTCGCCAGAATATGCAATGGAAGGTCTATTTTCAGTGAAATCCGATGTTTATAGTTTTGGAGTTTTGGTGCTAGAGATAATTACAGGCAAAAAGAACACTACCTATGTATCCAGCTACGTAAACTTGGTTGGTCAAGTTTGGGAGCTCTGGAAATTGGACAATGCAATGGAATTAGTAGACTCAAGTTTGGAAGGAGCAAGCTTTGAGTATGAAATCACGAGATGCCTCCAAATTGGGCTATTATGTGTGCAAGAGGATCCGACTGATCGTCCGACCATGTCGACTGTCATTTTCATGTTGGAAAATGAAGTGAATCTTCCTTGTCCAAAGAAACCTGCTTTCATTTTAAAGAGAGAAATTAACGAAGGAGATCCATCCAGTAGTACCAACTCCAATACCGAAGGAGTCAACTCTGTAAATGATCTAACAATTTCTGTAATAGTTGCTCGTTAG 2517 41.91 MNPLPPKPAVFLLLLFSVIFVGTHFSIAIDTSNSTIQIIKDGDHLVSTNKNFTLGFFSLNNSTTPRYVGIWYSQIPQRTIVWVANRNQPLNDTSGTFALDRHGNVVLFTPTQTISLWSTNTTIQSNDDVSIELQNTGNLALIERQSEKVIWQSFDYPSHVFLPYMKLGLNRQTGFSWFLTSWKALDNPGTGNFSCRIDPTGYPQLILYKGNVPRWRVGSWTGEKWSGVPEMTRSFIFNTTYIDNTQEISITDGVTDDTVLTSMTLDESGLLHRSTWSEQDKKWKDYWWAPTEWCDTYNQCDPNTNCDQYDTKQFYCKCLPGFEPRSNQSWLLNNPSGGCISKRPNAMCRSGEGFVKVSRVKVPDTSMASADLSMSLEACAQACLNDCNCTAYASANELTGSGSVMWHGDLIDTRTFANTGQDLHVRVDAIELAQYTQNSNRPSTKKVIVIVVVSFVALVLLLTSLVYLWKMARKRRERSRSLSYDLGDTLNPNEFDESRTNSDLPIFDLLTIAKATDDFSLNNKLGKGGFGAVYKGKLTNGVEIAVKRLAKNSGQGVEEFKNEVNLIAKLQHRNLVKILGYCVKNEEKMIVYEYLPNKSLDTFIFDDSKRALLNWKKRFEILRGIARGILYLHQDSRLKIIHRDLKTSNILLDVDLNPKIADFGMARIFGQDQNQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEIITGKKNTTYVSSYVNLVGQVWELWKLDNAMELVDSSLEGASFEYEITRCLQIGLLCVQEDPTDRPTMSTVIFMLENEVNLPCPKKPAFILKREINEGDPSSSTNSNTEGVNSVNDLTISVIVAR 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22054613 22067786 + MELO3C002524.2.1 Cme12g01428 344645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01428 838 ProSiteProfiles PAN/Apple domain profile. 348 428 IPR003609 -
Cme12g01428 838 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 45 832 - -
Cme12g01428 838 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Cme12g01428 838 CDD PAN_AP_plant 349 427 - -
Cme12g01428 838 CDD STKc_IRAK 525 790 - -
Cme12g01428 838 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKS1 45 832 - -
Cme12g01428 838 SUPERFAMILY Protein kinase-like (PK-like) 498 788 IPR011009 -
Cme12g01428 838 Pfam D-mannose binding lectin 79 183 IPR001480 -
Cme12g01428 838 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 187 IPR036426 -
Cme12g01428 838 Pfam Protein tyrosine and serine/threonine kinase 520 785 IPR001245 GO:0004672|GO:0006468
Cme12g01428 838 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Cme12g01428 838 Gene3D - 30 154 IPR036426 -
Cme12g01428 838 SMART ntp_6 349 427 IPR003609 -
Cme12g01428 838 ProSiteProfiles Bulb-type lectin domain profile. 30 154 IPR001480 -
Cme12g01428 838 SMART serkin_6 519 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01428 838 SMART blect_4 36 157 IPR001480 -
Cme12g01428 838 PIRSF SRK 2 838 IPR024171 GO:0004674
Cme12g01428 838 CDD B_lectin 37 157 IPR001480 -
Cme12g01428 838 Pfam PAN-like domain 348 413 IPR003609 -
Cme12g01428 838 ProSiteProfiles Protein kinase domain profile. 519 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01428 838 Pfam Domain of unknown function (DUF3403) 791 838 IPR021820 GO:0004674
Cme12g01428 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Cme12g01428 838 Gene3D Phosphorylase Kinase; domain 1 493 594 - -
Cme12g01428 838 Gene3D Transferase(Phosphotransferase) domain 1 595 795 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02683 Cme-Chr1:34268263 Cme12g01428 Cme-Chr12:22054613 1.22E-118 dispersed
Cme12g01428 Cme-Chr12:22054613 Cme12g01417 Cme-Chr12:22003631 0 dispersed
Cme12g01425 Cme-Chr12:22035451 Cme12g01428 Cme-Chr12:22054613 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65329 PF07714 PK_Tyr_Ser-Thr 4.60E-51 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01428 - - cmo:103485800 1677.92