Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01447 ATGGGGTCGCCTGAAATTACGGATTGGGTGTTCGATTACGGTGTGATTGAGGACTTTCCTGTCCCCGGTGGCGACCTGCCTTCACTGGATCTTCCCTCTTTCACTTTGCCTTGCGATTTCACTGCCTCCTTCAGGGCAGACTTTGATGAGCCACTTGGAATGGCAGAAGATGTAAAAGAATCTGGTTCCAGGAAAAGGATGAGCTCTGGATCATCAAATGCATTTGAGTCCAAGGCACGTAAAGAGAAAATGCGGAGGGATAAACTAAATGACAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAACTTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATTATACAGCTAAGGGATGAGGCTCAGAAACTTAAGGAGTCTAATGAAAGTTCTTTGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTACGAGATGAAAAACAAAGGTTGAAAGAAGCAAAAGATGGCCTTGAAAAGAAAATGAAGGCCTTTAATACACAACCAAGCTTCTTGCCTCACCCTCCAGCAATTCCTCCTGGATTTTCTTCTCCAAATCAGATTGTTGGGGGGAAATTGGTACCTGTTATTGGATATCCAGGAGTATCCATGTGGCAGTTTATGCCTCCGGGAGCCATTGATACATCGCAAGACCACGTTCTTCGGCCACCAGTCGCCTGA 705 44.82 MGSPEITDWVFDYGVIEDFPVPGGDLPSLDLPSFTLPCDFTASFRADFDEPLGMAEDVKESGSRKRMSSGSSNAFESKARKEKMRRDKLNDRFLELNSILNHGRPPKLDKSAILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEKNELRDEKQRLKEAKDGLEKKMKAFNTQPSFLPHPPAIPPGFSSPNQIVGGKLVPVIGYPGVSMWQFMPPGAIDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22226137 22229607 + MELO3C002507.2.1 Cme12g01447 344664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01447 234 CDD bHLH_AtILR3_like 78 153 - -
Cme12g01447 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 147 IPR036638 GO:0046983
Cme12g01447 234 MobiDBLite consensus disorder prediction 57 82 - -
Cme12g01447 234 Coils Coil 121 176 - -
Cme12g01447 234 PANTHER BHLH TRANSCRIPTION FACTOR 4 234 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cme12g01447 234 Pfam Helix-loop-helix DNA-binding domain 77 124 IPR011598 GO:0046983
Cme12g01447 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983
Cme12g01447 234 SMART finulus 79 130 IPR011598 GO:0046983
Cme12g01447 234 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 4 234 - -
Cme12g01447 234 Gene3D - 76 151 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00505 Cme-Chr6:3187554 Cme12g01447 Cme-Chr12:22226137 1.81E-42 dispersed
Cme08g00928 Cme-Chr8:6123063 Cme12g01447 Cme-Chr12:22226137 4.55E-15 dispersed
Cme11g00758 Cme-Chr11:9430545 Cme12g01447 Cme-Chr12:22226137 2.80E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42346 PF00010 HLH 4.80E-10 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01447 - - csv:101208894 445.277