Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01450 TCGGCCTTCCCTCCTTTTTTTGCATGTCAATTAGTGTTGGAATGTGTATTTGTATTTAGATTTCCATTTATAAAAGAATTGCCACAGCAATCTCACATACCCACAAACAAAATTCCGGAGTGCTACGAAGTAGAAATGGTTTGGTTAACATTCAGCTCTTCTCCTTCCCTCTTCTTGGGTTTTCTAATCTTCTTCTTCCTACCCTTTTGCCATCGCAACCGCATGGCAATGGCCCAAGATGATCTCGGATGGTTCTGCGATAATGCAGAAGGAAACTACACCACTAACAGTCCCTACAAAGCCAATCTAAACCACCTCCTTTCCACTTTCACAACCAATCAAATCGACTACGGCTTCTACAACCTCTCCTACGGCCATGACCACAAAGCTTATGCTATTGGTCTATGCAGAGGAGACGTTAGACCTGACACTTGCAGAAGCTGCCTCACCAACTCAATAACCCTTCTCACCAATAACTGTCCCACCCAAACTAATGCCATTGTTTGGTACGAAGACTGTTTTTTTCGTTACTCCGACCGCTCTCTATTCGGCACATTGGACCTTTCCCCCACTCGCTTTGTGGTGCTGCCCGTGACCAATAATGTTTCGGACGCTAGGTTTACTCAGTTAGCCACTGATTTGCTTCAACAACTCACTCCTAGAGCTGCATCCGGTGATTCCCGTTTGAAGTATGCCGCTGGAAGAATTGCTGTCCCCAATTTTCCTGTCCTTTCTGGGGCTGTGCAGTGTACTCCTGATTTGAATTCCGATGATTGCTCCAACTGCCTGGATGCTTCAATTGCACAAGTTCGAGATGCTTATGATACGGTCCCAAGAGTTAGGATTATGAAACCCAGTTGTAATATTCGATTTGACATCAACCGCCTGTTTCAGGATCCGCCGGCTTCATCCCCACCTCCCAATTTCTCAAATACAACAACTACTACTAATACTTCTCCACGAGGAAACAAAGCTCGAAAACTGGTCTTGGTTTTGGTGCCTATTATTGTGGTTGTTCTGGCTGCTCTCCTACTAATTATCATCATCATCTTAAGAGCAAGGAATTCAAATAAAAAAAATGAAATTGCAAATGAAGAATCTTTGCAGTTCGATTTTGATACAATTAAAATCGCAACCAATGGATTCTCTGATGCAAATCAACTTGGGCGAGGTGGGTTTGGAGCTGTCTATAAGGGTCGGCTTCCGGATGGACAAAACATAGCTGTGAAGAGACTATTTCAAGGCTCAAAACAAGGAGATGAGGAATTTAAGAATGAAATCGTGTTGGTGGCTAAGCTTCAACATCGAAATTTAGCTCAACTCTTGGGTTTCTGTTTCAAACAAAATGAAAAGCTCCTCATTTATGAGTTTGTGGAGAACTCCAGTCTTGAGAAATTCCTCTTTGATCCTATCCAGCGTGAGAGTTTAGATTGGAACACTCGATACAATATTATACAAGATATTGTTCGAGGACTTGTATACCTTCACGAAGACTCTCAACTTAGAATCATTCATCGAGACCTTAAAGTCTCTAACATTTTATTAGATGCAGAAATGAATGCTAAAATTTCTGATTTTGGAACTGCAAGACTATTTGAACATGATCAAACACGAGGAGATACGAGAAAAATCGTCGGTACTTATGGATATATGGCTCCAGAGTACGCGTGGCATGGTAAACTTTCAGTCAAATCAGATGTATTTAGTTTTGGTGTTTTAGTTTTGGAGATTCTAACTGGACAAAAGAATAATCGAGCTCAAACCAACAAGGAGATTTCTGAGTCTCTTATCAGCCATGCATGGAGAAGTTGGCAATCAGGAAATTCACTTGATATTGTTGATCCATGTTTGAAAAGTGGTTCAAAAATTGAAATGGCTAGATGCATTCATGTTGGATTGTTATGTGTTCAAGAAAATCCACTTGAGAGGCCAACAATGACTACCGTACTTCTCATGCTTAACAGTGGTTCTACTACTCTTCCAAGACCCTCTGAACCGGCATTTTTTATCAATAGTAATTACTCTAAAATGTCTGAACAATTTGTAGATCATAGTTCAACTCAAGATGTGAACGAATTGTCAATTACTGAGTTATATCCTCCAACAATGGCTGCTACAACATTTGTTTGTTCCATTACTCTGAGTTTGTTGGTGTTGGCACTAGTTAACCATCCTCCTCTCGCATTTGCTCAGCCCAGACTGTCGAGCTATAGATGCGTGGACGATACCAAAAACAACCGCACAACAGACCTCGCTGCCTACAAAGCCAATCTGAACCACCTCCTCACCACCCTCACCACCGACCATCATATCGACTATGGCTTCTACAACTTCTCCTACGGCGCCGGCGAAAACAGAGCAAACTTGATTGGGCTCTGCAGAGGGGACATTTCGCCTGAGACTTGCCGGAAATGCCTCAACGACTCCAGAGATCTTCTCCCTGTGCGATGTCCGACCCAAAAGGAAGCCATTGGATGGTACCAAGATTGCATGCTCCGTTACTCCGACCGCCCCATCCTCGGCTCCATGGAACTTTCACCCACTATTCCTACGGGGTATCCCTTCAATGCGTCGGATCCGGAACGTTTCACTCAGGCCGCTACGAAGCTGATTGCAAGTCTCATCACCAAGGCCTCCGCCGGCGATTCCCATGTGAAATTTTCTACAGGGAACACAACTCTTCCGGATTTGCCCACAATTTATGCTTTTGCGCAGTGCACCCCAGATTTGTCCCAACGGCAGTGCAACGAGTGCTTGACTGAGGCTCTGGCAATAATCCAAGACTGCTGTGTCGGAACCCTTTGGGGCAGAGTTCTTACACCCAGTTGTCTTTTTCGATATGGAAATTACCCTATCATTCAATCGCAGCCGTTGCAGCCGCCGTCGCCTTCCCCTGTACCTCCTCTGCTTAACGAAACTACCCACCACGGAAATAAAAGAAAACTCTCCGGAACTTTCATAGCTGTGATTGTGCCAATGGCTTTTGTTGTAGTTTTACTACTGACGATCACCGTGTACTTAGATCCAACCGAGGAAGATATGATGACGATGGGATTCGTACAGTTCAATTTCAACACCATTAGAAAGGCAACAGACGAATTTTCAGATGAAAATAAACTTGGGGAAGGTGGGCTTGGAGCAGTTTATAAGGGGAAGCTTCCAAACGGACGAATCGTAGCGGTGAAAAGGCTGTCTCAAGCTTCAGGACAGGGAGATGTTGAGTTTAAGAACGAACTCGTTTTGGTTTCTAAGCTTCACCATCGGAATTTGGTTAAGCTTTTGGGTTTCTCCTTCAAAGAAAATGAAAAGGTTCTCGTTTATGAGTTTTTGCACAATGGAAGCCTTCACAATTTCATTTTCGATCCACTCAAGCGTCAAAGTTTAGATTGGGCAACTCGGTACAAAATTATAAGAGGCATTACTCGAGGACTTACTTATCTTCATGAAGATTCTCGAATCAAAATTATTCATCGAAACCTAAAAGCCAGCAACATTTTATTAGATATAGAGATGAATGCTAAAATTTCAGATTTTGGTATTGCAAAGCTATTTGCATCCGAACAAACACAAGGTGATACAAGTACGATCAAGGGCACTTCGGGGTATATGGCTCCCGAATACGCAAGGCATGGACATCTTTCCTCAAAGTCAGACGTTTTTAGCTTCGGTGTTTTAGTTTTAGAGATTGTGACCGGACAAAGAAATAACCGAACTTGCAACAACATTGAGAACATAGAAGACCCTCTTATAAGCTATGCCTGGAGAAATTGGAGGGAGGGAACACCATTGAATATTGTAGATCCTTCTATTGAGATACAAAAGGAAGTAGAAAATGAAGTGACAAGAATCATTCATGTCGGGTTACTATGCATTCAAGAAAAGGTTGACGAAAGGCCAAAAATGACTACTGTACTTCTTATGGTCAACGGTGACTTAACTGATTTTCCTAAACCTTCCCAGCCATCTTTCTTTATGAATGCAAGTACCCAACAAAATTGCTCTTAG 4005 42.75 SAFPPFFACQLVLECVFVFRFPFIKELPQQSHIPTNKIPECYEVEMVWLTFSSSPSLFLGFLIFFFLPFCHRNRMAMAQDDLGWFCDNAEGNYTTNSPYKANLNHLLSTFTTNQIDYGFYNLSYGHDHKAYAIGLCRGDVRPDTCRSCLTNSITLLTNNCPTQTNAIVWYEDCFFRYSDRSLFGTLDLSPTRFVVLPVTNNVSDARFTQLATDLLQQLTPRAASGDSRLKYAAGRIAVPNFPVLSGAVQCTPDLNSDDCSNCLDASIAQVRDAYDTVPRVRIMKPSCNIRFDINRLFQDPPASSPPPNFSNTTTTTNTSPRGNKARKLVLVLVPIIVVVLAALLLIIIIILRARNSNKKNEIANEESLQFDFDTIKIATNGFSDANQLGRGGFGAVYKGRLPDGQNIAVKRLFQGSKQGDEEFKNEIVLVAKLQHRNLAQLLGFCFKQNEKLLIYEFVENSSLEKFLFDPIQRESLDWNTRYNIIQDIVRGLVYLHEDSQLRIIHRDLKVSNILLDAEMNAKISDFGTARLFEHDQTRGDTRKIVGTYGYMAPEYAWHGKLSVKSDVFSFGVLVLEILTGQKNNRAQTNKEISESLISHAWRSWQSGNSLDIVDPCLKSGSKIEMARCIHVGLLCVQENPLERPTMTTVLLMLNSGSTTLPRPSEPAFFINSNYSKMSEQFVDHSSTQDVNELSITELYPPTMAATTFVCSITLSLLVLALVNHPPLAFAQPRLSSYRCVDDTKNNRTTDLAAYKANLNHLLTTLTTDHHIDYGFYNFSYGAGENRANLIGLCRGDISPETCRKCLNDSRDLLPVRCPTQKEAIGWYQDCMLRYSDRPILGSMELSPTIPTGYPFNASDPERFTQAATKLIASLITKASAGDSHVKFSTGNTTLPDLPTIYAFAQCTPDLSQRQCNECLTEALAIIQDCCVGTLWGRVLTPSCLFRYGNYPIIQSQPLQPPSPSPVPPLLNETTHHGNKRKLSGTFIAVIVPMAFVVVLLLTITVYLDPTEEDMMTMGFVQFNFNTIRKATDEFSDENKLGEGGLGAVYKGKLPNGRIVAVKRLSQASGQGDVEFKNELVLVSKLHHRNLVKLLGFSFKENEKVLVYEFLHNGSLHNFIFDPLKRQSLDWATRYKIIRGITRGLTYLHEDSRIKIIHRNLKASNILLDIEMNAKISDFGIAKLFASEQTQGDTSTIKGTSGYMAPEYARHGHLSSKSDVFSFGVLVLEIVTGQRNNRTCNNIENIEDPLISYAWRNWREGTPLNIVDPSIEIQKEVENEVTRIIHVGLLCIQEKVDERPKMTTVLLMVNGDLTDFPKPSQPSFFMNASTQQNCS 1334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22242891 22252225 - MELO3C002504.2.1 Cme12g01450 344667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01450 1334 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 740 1330 - -
Cme12g01450 1334 ProSiteProfiles Gnk2-homologous domain profile. 734 839 IPR002902 -
Cme12g01450 1334 SUPERFAMILY Protein kinase-like (PK-like) 368 683 IPR011009 -
Cme12g01450 1334 ProSiteProfiles Protein kinase domain profile. 382 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01450 1334 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 76 692 - -
Cme12g01450 1334 CDD STKc_IRAK 388 654 - -
Cme12g01450 1334 MobiDBLite consensus disorder prediction 299 321 - -
Cme12g01450 1334 SMART serkin_6 382 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01450 1334 SMART serkin_6 1034 1308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01450 1334 Gene3D Phosphorylase Kinase; domain 1 1005 1109 - -
Cme12g01450 1334 Gene3D Phosphorylase Kinase; domain 1 348 457 - -
Cme12g01450 1334 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 740 1330 - -
Cme12g01450 1334 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Cme12g01450 1334 ProSiteProfiles Protein kinase domain profile. 1034 1323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01450 1334 ProSiteProfiles Gnk2-homologous domain profile. 189 296 IPR002902 -
Cme12g01450 1334 ProSiteProfiles Gnk2-homologous domain profile. 845 952 IPR002902 -
Cme12g01450 1334 SUPERFAMILY Protein kinase-like (PK-like) 1013 1307 IPR011009 -
Cme12g01450 1334 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 76 692 - -
Cme12g01450 1334 CDD STKc_IRAK 1040 1310 - -
Cme12g01450 1334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Cme12g01450 1334 Gene3D - 736 838 IPR038408 -
Cme12g01450 1334 Gene3D - 195 295 IPR038408 -
Cme12g01450 1334 Gene3D - 83 182 IPR038408 -
Cme12g01450 1334 Gene3D - 853 951 IPR038408 -
Cme12g01450 1334 Gene3D Transferase(Phosphotransferase) domain 1 458 661 - -
Cme12g01450 1334 Gene3D Transferase(Phosphotransferase) domain 1 1110 1315 - -
Cme12g01450 1334 Pfam Protein kinase domain 383 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01450 1334 Pfam Protein kinase domain 1035 1304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01450 1334 ProSiteProfiles Gnk2-homologous domain profile. 81 182 IPR002902 -
Cme12g01450 1334 Pfam Salt stress response/antifungal 86 179 IPR002902 -
Cme12g01450 1334 Pfam Salt stress response/antifungal 739 836 IPR002902 -
Cme12g01450 1334 Pfam Salt stress response/antifungal 201 292 IPR002902 -
Cme12g01450 1334 Pfam Salt stress response/antifungal 858 950 IPR002902 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00354 Cme12g01450 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00373 Cme-Chr8:2313604 Cme12g01450 Cme-Chr12:22242891 1.92E-139 dispersed
Cme08g00374 Cme-Chr8:2320685 Cme12g01450 Cme-Chr12:22242891 7.27E-170 dispersed
Cme08g00376 Cme-Chr8:2339329 Cme12g01450 Cme-Chr12:22242891 9.02E-21 dispersed
Cme12g01448 Cme-Chr12:22229817 Cme12g01450 Cme-Chr12:22242891 0 dispersed
Cme12g01450 Cme-Chr12:22242891 Cme12g01454 Cme-Chr12:22280983 0 dispersed
Cme12g01449 Cme-Chr12:22240996 Cme12g01450 Cme-Chr12:22242891 9.34E-08 tandem
Cme12g01450 Cme-Chr12:22242891 Cme12g01451 Cme-Chr12:22262412 1.49E-131 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65331 PF00069 Pkinase 1.30E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01450 - - cmo:103489206 1545.79