Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01454 ATGACGAGCTCAAGGTTGATGATCCTCTGTTTCGCTTTTTTCTCCATATCCATTTTCCTCCGCCATGCAATCGCTCAGCCTGATTTCCAGATATACGATTGCGTCGAAAACCAAGGCAATTTCACCACTAACTCAACCTACAAAGCTAATCTTAATCACCTCCTCTCTACCTTCACCACCGATCACCAAATTAACTATGGCTTTTACAACTTCTCTTACGGCCATCAAAACAGAGCCAATGTGATTGGGCTATGCAGAGGAGACCTAACGCTGCTCGCTTGCACCACCTGCTTAAACAACTCTAGAACTCTTCTCCCACTTCTCTGTCCCAACCATATAGAAGCCATCGGATGGTATGACGAATGTATGCTCCGTTACTCAAACCGCTCCATATTCGGCTCCATGGAGACTTCCCCGGCTTTCCGTGCTTGGAATCCCAACAATGCTTCTGACCCACATCGATTCATCCAGCTCGCTACAACTCTCCTCCAACAACTCACTCACGAAGCTGCGTTGGGCGATTCTCGTTTAAAGTTCGCTACTGGAATCATATCCGTTCCAAATTTCCCAACCATCTATGGAGCTGTTCAGTGTACTCCTGATTTGTCTCCGCAAAATTGCACCACTTGCTTGTTTGGTGCTATTCAACGAATTCAATTATGTTGCGATGGGAAAGCAGGAGGCCGAATTGGGAGACCCAGTTGTAACTTTCGATTCGAGAGCTACCTTTTTTATAAGCAATCCTCTATTTCTTTAGCCCCATCTCCAAATCCGTCATTACCACCATCTCCTCCTCCACAACGAAAAGCATCTCGGAGAGTGGCCGTCATAGTTGCGTTCGTCGTCGTTTGTGCTGTCATAATAACGATCACAATCTGTATTTTCTTAACCAAAAGAAGGCGAAGAAACCCATCAACTCAAGTACCTTCAACAGGTATGGCACTTGAGGATGAAGAAACTGATATCGAATCTTCGCAATTTGATTTTGACATGATTAAAATTGCAACAAATGGATTCTCGGATGAAAATAAACTCGGGGAAGGTGGTTTTGGGGTGGTTTATAAGGGTCGACTTCCCAATGGAGAAACTATTGCTGTCAAACGACTCTCTCGAGCTTCAAGTCAAGGAGATAATGAGTTCAAGAATGAAATATTATTAGTTGCTAAACTTCAACATCGAAATTTAGTTCAGCTATTGGGTTTCTGCTTCAAAGAAAATGAAAAGCTTCTCATTTACGAGTTTGTAGAGAATTCTAGTCTCGAGAAATTCCTATTTAATCCTAAAACAGGTGTAAGTTTAGATTGGAAAGCTCGCTACAAGATCATACATGGAATAACTCGAGGACTTGTTTACCTTCACGAAGAGTCTCAACTTAGAATTATTCATAGAGATCTCAAGGCTAGTAATATTTTACTAGATGTGGATATGAATGCTAAAATTTCTGATTTTGGTACTGCAAGATTATTTTTACATGATCAAATACAAGGAAATACAAGAAAAGTAGTTGGGACTTATGGATACATGGCTCCCGAATACGTCCACAAAGGTCATTTCTCAATCAAGTCGGATGTCTTTAGTTTTGGTGTTTTAGTTTTGGAGATTGTGACTGGAATAAAAAATAATCAAGTTCATTTGGACAACGAGATTGTAGGTCTTGTAGAGCATGCTTGGAGAAATTGGCATAATGGAACTACTCAAAATATCATAGATCCTACCTTGACAAGTGGTTCAAAGACCGAAATGGCTAGATGCATTCATATAGGGTTGCTATGTGTTCAAGAAAATGTAGCTAAGCGGCCAAACATGGGTACCGTACTTCTCATGCTTAACAGCTACTCTATTACCCTTCCAAGACCTTCTCAACCTGCTTTCATTTTGAGTACCACCAACTCTCAAATCTCTGAACAATCTAACAACAACTCGACTCACGAACTAAATGATATGTCAATTACGGAGCTTTACCCTCGTTAG 1971 41.1 MTSSRLMILCFAFFSISIFLRHAIAQPDFQIYDCVENQGNFTTNSTYKANLNHLLSTFTTDHQINYGFYNFSYGHQNRANVIGLCRGDLTLLACTTCLNNSRTLLPLLCPNHIEAIGWYDECMLRYSNRSIFGSMETSPAFRAWNPNNASDPHRFIQLATTLLQQLTHEAALGDSRLKFATGIISVPNFPTIYGAVQCTPDLSPQNCTTCLFGAIQRIQLCCDGKAGGRIGRPSCNFRFESYLFYKQSSISLAPSPNPSLPPSPPPQRKASRRVAVIVAFVVVCAVIITITICIFLTKRRRRNPSTQVPSTGMALEDEETDIESSQFDFDMIKIATNGFSDENKLGEGGFGVVYKGRLPNGETIAVKRLSRASSQGDNEFKNEILLVAKLQHRNLVQLLGFCFKENEKLLIYEFVENSSLEKFLFNPKTGVSLDWKARYKIIHGITRGLVYLHEESQLRIIHRDLKASNILLDVDMNAKISDFGTARLFLHDQIQGNTRKVVGTYGYMAPEYVHKGHFSIKSDVFSFGVLVLEIVTGIKNNQVHLDNEIVGLVEHAWRNWHNGTTQNIIDPTLTSGSKTEMARCIHIGLLCVQENVAKRPNMGTVLLMLNSYSITLPRPSQPAFILSTTNSQISEQSNNNSTHELNDMSITELYPR 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22280983 22289149 - MELO3C002496.2.1 Cme12g01454 344671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01454 656 Gene3D Phosphorylase Kinase; domain 1 304 414 - -
Cme12g01454 656 SUPERFAMILY Protein kinase-like (PK-like) 322 640 IPR011009 -
Cme12g01454 656 ProSiteProfiles Protein kinase domain profile. 339 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01454 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Cme12g01454 656 ProSiteProfiles Gnk2-homologous domain profile. 137 244 IPR002902 -
Cme12g01454 656 Gene3D Transferase(Phosphotransferase) domain 1 415 617 - -
Cme12g01454 656 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 637 - -
Cme12g01454 656 Pfam Protein tyrosine and serine/threonine kinase 342 557 IPR001245 GO:0004672|GO:0006468
Cme12g01454 656 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Cme12g01454 656 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 637 - -
Cme12g01454 656 Gene3D - 137 244 IPR038408 -
Cme12g01454 656 Gene3D - 28 130 IPR038408 -
Cme12g01454 656 Pfam Salt stress response/antifungal 34 128 IPR002902 -
Cme12g01454 656 Pfam Salt stress response/antifungal 148 242 IPR002902 -
Cme12g01454 656 CDD STKc_IRAK 345 610 - -
Cme12g01454 656 MobiDBLite consensus disorder prediction 630 648 - -
Cme12g01454 656 ProSiteProfiles Gnk2-homologous domain profile. 29 131 IPR002902 -
Cme12g01454 656 SMART serkin_6 339 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01454 656 MobiDBLite consensus disorder prediction 630 656 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00369 Cme-Chr8:2295335 Cme12g01454 Cme-Chr12:22280983 9.03E-57 dispersed
Cme08g00375 Cme-Chr8:2331578 Cme12g01454 Cme-Chr12:22280983 2.45E-144 dispersed
Cme12g01449 Cme-Chr12:22240996 Cme12g01454 Cme-Chr12:22280983 2.10E-13 dispersed
Cme12g01450 Cme-Chr12:22242891 Cme12g01454 Cme-Chr12:22280983 0 dispersed
Cme12g01451 Cme-Chr12:22262412 Cme12g01454 Cme-Chr12:22280983 2.40E-170 dispersed
Cme12g01453 Cme-Chr12:22277737 Cme12g01454 Cme-Chr12:22280983 1.33E-18 tandem
Cme12g01454 Cme-Chr12:22280983 Cme12g01455 Cme-Chr12:22290333 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65333 PF07714 PK_Tyr_Ser-Thr 1.50E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01454 - - cmo:103489179 1247.26