Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01455 ATGTGTTCTTCAACCCCAATGATCCTTTGTTTCCTCTGCTTCACTTCATTCTTCATACCCATTTTAGTAATCGCTCAGCCAGATTTTCAATTTTATATTTGCGTCGAAGATCAAGGTAACTTCACCACTAACAGTACGTACAAAGTGAATTTAGATCATATCCTCTCCGATCTCACCACCCACCGCCAAGTTAACAACGACTATGCCGGTTTTTACAACTTTTCTTATGGCCTTACCCACAGAGCCAATGTAATTGGGCTTTGCAGAGGAGACCTTATGCCAGATGCTTGCACCAGATGCCTCAACAACTCTAGAACTCTTCTCCCTTCTCTTTGTCCCAACTATTACGAAGCCATCGGATGGTACGATGAGTGTATGCTTCGCTATTCCAACCGCTCGATTTTTCGCAAAATGGAGACATTACCTGGTTTCTATGCTTGGAATCCCAACAATGCTTCTGATCCTAATCGCTTCATCCAAGTGTCGAGAACTTTGCTCGAACAACTCACTACCAACGCTACATCGGGCGATTCCAGTCAAAAGTTCGCCACTGGAATCACTACGATCCCCAACTTTCCAAAAATATACGGGGCTGTTCAATGCACTCCTGATTTGTCTGCTGAAGATTGCAGTATCTGCTTGCTTGGAGCTCTTGACGATATTCGAACGTGCTGTTATGGTAAAGCAGGGGGTAGAGTTCAGGCACCCAGTTGTTATTTTAGATTTGAGACTTATCTTTTTTATCAGCTACCTTCTATTTCTTCATCGCCTTCTCCGCACATAGCCCCATCTCCTATTCAATCTAATTCAAGTACACCTCCAAAACCATCTCGAAAACTCGTTACGGTGGTTGTGCCGATTATCGTGGGTGTTGTAGTTGCTGTGGTGATATTAACCCTCAGTATCTATATCTTCATGAAGAAAACAAAGGAAAGAAAGCCAACAAATCATGCATCTGGGTCAAGTGAGCTGATTACCATTAATTTTGAATGCCAACATCACTGGAGGATTCATCTCATAGGTATGGCTCCAGAGAATGAAGATACAGATGAAGGGTCCTCCCAATTTGATTTCGACATTATTAAAACGGCAACAGATGGATTCTCTGAAGCAAATAAACTTGGGGAAGGTGGATTTGGAGTGGTTTACAAGGGTCGACTTCCCACTGGAGAAACCATTGCTGTCAAACGACTCTCTCGAGCTTCAAGTCAAGGAGATAAGGAGTTCAAGAATGAAATCTTATTAGTTGCTAAACTTCAACATCGAAATTTAGTTCAGCTATTGGGTTTTTGCTTCAAAGGAAACGAAAAGATTCTCATTTACGAGTTGGTAGAGAATTCCAGTCTCGAGAAATTCCTCTTTAGTCCCAAAAAATGTGTGAGTTTAGATTGGAAAACTCGTTACAAGATTATTGGTGGAATAACTCGAGGACTTGTTTACCTTCACGAAGAGTCTCAACTCAAAATCATACATAGAGATCTCAAAGCTAGTAACATTTTACTAGATGCAGATATGAATGCTAAAATTTCTGATTTTGGCACTGCAAGATTATTTTTACATGATCAAACGCAAGGAGATACAAAAAAAGTGGTTGGCACTTATGGATACATGGCTCCTGAATACGTCCACAAGGGTCATTTCTCAGTCAAATCAGATGTCTTTAGCTTCGGCGTTTTAGTTTTGGAGATTGTAACTGGACTAAAAAACAATCAAATTCATATGTTTGACAACGAGATTGTAGGTGTTGTAGGCTATGTTTGGAGAAATTGGCAGAATGGAACCACTCAAAATATCATAGACCCCACTTTGACAAGTTGTTCAAAGCCAGAAATGGTTAGATGCATTCATATAGGGTTACTATGCGTTCAAGAAAAAGTAGCTAAGAGACCAACCATGAGTACCATACTTCTCATGCTTAATAGCTACTCTATCACTCTTCCAAGACCTTCTCAACCTGCTTTCCTTTTAAGTAGCATCAACTCTCATATGTCTGATCAACTAAATCACAACTCGATTGATCAAGAACGAAATGAGATGTCAATTACCGATCTTTATCCTCGATAA 2064 40.31 MCSSTPMILCFLCFTSFFIPILVIAQPDFQFYICVEDQGNFTTNSTYKVNLDHILSDLTTHRQVNNDYAGFYNFSYGLTHRANVIGLCRGDLMPDACTRCLNNSRTLLPSLCPNYYEAIGWYDECMLRYSNRSIFRKMETLPGFYAWNPNNASDPNRFIQVSRTLLEQLTTNATSGDSSQKFATGITTIPNFPKIYGAVQCTPDLSAEDCSICLLGALDDIRTCCYGKAGGRVQAPSCYFRFETYLFYQLPSISSSPSPHIAPSPIQSNSSTPPKPSRKLVTVVVPIIVGVVVAVVILTLSIYIFMKKTKERKPTNHASGSSELITINFECQHHWRIHLIGMAPENEDTDEGSSQFDFDIIKTATDGFSEANKLGEGGFGVVYKGRLPTGETIAVKRLSRASSQGDKEFKNEILLVAKLQHRNLVQLLGFCFKGNEKILIYELVENSSLEKFLFSPKKCVSLDWKTRYKIIGGITRGLVYLHEESQLKIIHRDLKASNILLDADMNAKISDFGTARLFLHDQTQGDTKKVVGTYGYMAPEYVHKGHFSVKSDVFSFGVLVLEIVTGLKNNQIHMFDNEIVGVVGYVWRNWQNGTTQNIIDPTLTSCSKPEMVRCIHIGLLCVQEKVAKRPTMSTILLMLNSYSITLPRPSQPAFLLSSINSHMSDQLNHNSIDQERNEMSITDLYPR 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22290333 22293152 - MELO3C002495.2.1 Cme12g01455 344672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01455 687 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 673 - -
Cme12g01455 687 CDD STKc_IRAK 374 640 - -
Cme12g01455 687 Pfam Protein tyrosine and serine/threonine kinase 371 636 IPR001245 GO:0004672|GO:0006468
Cme12g01455 687 ProSiteProfiles Gnk2-homologous domain profile. 29 134 IPR002902 -
Cme12g01455 687 Pfam Salt stress response/antifungal 151 245 IPR002902 -
Cme12g01455 687 Pfam Salt stress response/antifungal 34 131 IPR002902 -
Cme12g01455 687 Gene3D Transferase(Phosphotransferase) domain 1 444 647 - -
Cme12g01455 687 Gene3D - 143 247 IPR038408 -
Cme12g01455 687 Gene3D - 28 133 IPR038408 -
Cme12g01455 687 ProSiteProfiles Gnk2-homologous domain profile. 140 247 IPR002902 -
Cme12g01455 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Cme12g01455 687 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 673 - -
Cme12g01455 687 SUPERFAMILY Protein kinase-like (PK-like) 352 667 IPR011009 -
Cme12g01455 687 Gene3D Phosphorylase Kinase; domain 1 326 443 - -
Cme12g01455 687 ProSiteProfiles Protein kinase domain profile. 368 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01455 687 SMART serkin_6 368 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01455 687 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00371 Cme-Chr8:2299093 Cme12g01455 Cme-Chr12:22290333 2.45E-153 dispersed
Cme12g01454 Cme-Chr12:22280983 Cme12g01455 Cme-Chr12:22290333 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65334 PF07714 PK_Tyr_Ser-Thr 1.30E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01455 - - csv:101207184 1195.26