Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01459 ATGGCCATGGAAGCTCCCACGAATATTTCGTTACGTCGTCGTTCCCTTACTGCTCCAGTTTCACCTTCTGACCAAATATTTCGATACGTCGTCGTAAATGCTTCCGCCGTTGATCTTCCACCTCCTCCGCCACCTTCTCCACCTCCTCCGCCGCCTTCTTCACCTCCTCCGCCGCCTTCTTCACCTCCTCCGAACGTGCCTCCGCCCCCTTTTCCGGATGCACCTCCTCCAGCCCAATCTTGGACGGAGTTGAACCCATCTCCCTCGACTCCTTCACCGCTCTCCTCTCTTTCCATGCCACTACCACCCGCTACGTCGCCTGATCTTTCACCACTTCCAGGGGAAAGCAGATACTCATCGTTGCCAATGATCATTCTGGTTCTAATTGCAACTAGTCTCTTCATACCTTTACTTGTTCGGGGATATAAATGTTTCATACGCCGAGGAGCAAAGAAAAAACACACTACTTTAAAGAAGGAAGACAGTACTTTTGTTACTGAGTTCACCTCCATTGAATCTCTTCAATATGATTTCAATACAATCGATGCCGCTACAAGCAATTTCTCAGCAGACAACAAACTGGGTGAAGGTGGATTTGGTGCAGTCTACAAGGGTATGCTTGATAATGGACAAGAGATAGCAGTGAAAAGATTATCGAGAAGATCTTTGCAAGGTTCTGAAGAATTCAAGAATGAAGTTATGGTTGTTTCTAAACTTCAACATAGAAATCTAGTAAGACTATTGGGGTTCTGCTTGGAGGGTGAAGAAAAGATACTCATCTATGAATACATTCCCAACAAAAGCCTCGACTATTTCCTATTTGACTCCAAGAGACGACAAGAATTGGATTGGTTGAGTCGATACAAGATCATTAACGGCATTGCTCGTGAAATTTTATATCTACATGAAGATTCTCGACTTAGAATTATTCATCGTGATCTTAAAGCTAGTAATGTCTTGTTAGATGACAATATGCATCCAAAAATCTCAGACTTTGGTATAGCAAGAATTATTCAAGTGGCCGATCAAAATAATCAAGCAAATATTACAAATCGAATAGTTGGTACTTATGGGTACATGTCTCCTGAATATGCAATGTATGGAAATTTCTCGACAAAATCCGATGTGTATAGCTTTGGAGTTTTGATCTTAGAGATAATAAGTGGAAAGAAAAACAGTACATTTTATCTATCAGAACTTGCCGAAGACATCTTAACTTACGCTTGGAAACTATGGAAGGAGGAGATGGCATTAGAATTATCGGACCCAAGTCTTGAAACTAGGTACTCAAAAGATGAGGTACTTAGATGCATTCATATTGGTTTACTATGTGTGCAAGATGATCCAAGTCGTAGACCTTCCATGGCATCCATTGTTCTTATGCTCAACACTTACTCGGTTCCTTTGCCTTTGCCCGAAGAGCCAACAATCTTCATGCACAATACAGACAATGCAATTGTAATCAATAGTGATCAACTTGCCACCAACCTTTTCATTTCCTCTACCAATGAAATATCTATAACTGAGTTGCACCAGGTTGCGGTGGCTAAGAAAGTTGTTTATCCCATTAATTCTGCAAAATCCTTCTTCTCCGTTCACATAATTCTTACAATTTGTTCAAAAACCTTAAGCAGACCCACTTTTTTTAAACTCCAATATAACTCCTTTACCATGCTCAATTTACTTACTTTCATCTTCCTCCTCAATCTCCTTACCCATGGAAACGCTCAGAACGAAGCCTCTTACCCATATCGCAGATGCTTGACCGGCAATTTCACTCAGAACAGCACCTATCAGGCCAACCTCAATCTTCTCTTTTCAACTCTCTCCACCAACGGCCCCCCAACGAACAGATTCTTCAATACTTCCGTCGGCCGATCCCCAAACGACACCGTTTATGGTCTCTTCCAGTGCCGTGGAGACGTCACCAACGCCACCTGTCGAACTTTCTTAGCCACCGCAACCAGAGACGCAGAGCGACTGTACTGTCCTTTGGCAAAAGGCGCTGTGATTTGGTACGACGAAATCATTTTCCGCTATTCCGACCAACCTTTCTTTTCCATCATTACCTCAACCCCAAATTTGCGGTTACTGAATCTGGTTAATATAGATGGCGACAAGGCTCGATTCAACCAATTAGTCATGTCCACGTTGAGAGCCACCGCGGCCCTGGCAGCCTCTTCAATGGATGAATTGTTTGCAACCCAGATGGCTAATTTCACACAAGATCGAAATATTTACACATTAGCTCAGTGTACCGGCGATTTGTCTAATACAGATTGCGGAGAATGCTTACGCCAAGCTACCAATGAAATTCCGAATTGTTGTACTGATAAACAAGGCGGAAGAGTTCTGCTTCCCAGTTGTATTGTTCGTTATGAAGTTTACTCGTTTTACGAAACTTCCATACCGCCTCCCGCAACTCCCACGCCCATTTCCACAATCCCATCACGGCCTCTTCTTCCTTCTTCTCCTCCACCTGGGGAAAGAAGGTCCTCAACGGTGTTAATTGTAGCCATTGTGGCTCCAATTACCGTCTCCATATTGCTGTTTGTCATGGGATGTTGCTTCCTGCGCCAGAGAGCGAAGAAGAGAGACTCTGCTGTGAAGGAAGATAGTGTTGTTGATGAGATGACCACTTCGGATTCTCTTCAATTTGATTTCAAAACAATTGAAGCTGCTACTAACAAATTCTCAGAGGAAAACAGATTGGGAGAAGGTGGATTTGGAGCTGTCTTCAAGGGTAGGCTTGATAATGGACAAGAGATAGCTGTGAAGAGACTGTCGAGAGGATCTTTGCAAGGTTCTGAAGAGTTCAAGAATGAGGTTATGTTGGTTGCTAAGCTTCAACATAGAAACCTAGTAAGTGGTTACATGTCTCCTGAGTACGCAATGCACGGAAATTTCTCAATGAAATCCGACATCTATAGCTTTGGAGTTTTAGTCTTAGAGATTATAAGCGGTAGGAAAAACAACACCTTCTACTTGTCAGATCTTGCCGAAGATATTTTGACCTATGCTTGGGCACTGTGGAAGGACGGAATACCATTAGAATTATTGGACCCAATGTTGAAAGATAATTACTCGAGAAATGAGGTGCTTAGATGCATTCATATTGCTTTATTATGTGTTCAAGAGGATCCTAACAGCAGACCTTCCATGGCATCCATTGTTCTTATGCTTAATAGTTATTCCGTTACTTTGCCGATACCTAAAGAGCCAGCATTGTTCGTGCGGAGTAAAGACAATGGCAATACTATAGGCAGTGATCATTCTTCTAACAAGTCTACCAAGTGTTCTGTCAATGAAACATCTCTATCTGAATTGCATCCACGATGA 3339 42.68 MAMEAPTNISLRRRSLTAPVSPSDQIFRYVVVNASAVDLPPPPPPSPPPPPPSSPPPPPSSPPPNVPPPPFPDAPPPAQSWTELNPSPSTPSPLSSLSMPLPPATSPDLSPLPGESRYSSLPMIILVLIATSLFIPLLVRGYKCFIRRGAKKKHTTLKKEDSTFVTEFTSIESLQYDFNTIDAATSNFSADNKLGEGGFGAVYKGMLDNGQEIAVKRLSRRSLQGSEEFKNEVMVVSKLQHRNLVRLLGFCLEGEEKILIYEYIPNKSLDYFLFDSKRRQELDWLSRYKIINGIAREILYLHEDSRLRIIHRDLKASNVLLDDNMHPKISDFGIARIIQVADQNNQANITNRIVGTYGYMSPEYAMYGNFSTKSDVYSFGVLILEIISGKKNSTFYLSELAEDILTYAWKLWKEEMALELSDPSLETRYSKDEVLRCIHIGLLCVQDDPSRRPSMASIVLMLNTYSVPLPLPEEPTIFMHNTDNAIVINSDQLATNLFISSTNEISITELHQVAVAKKVVYPINSAKSFFSVHIILTICSKTLSRPTFFKLQYNSFTMLNLLTFIFLLNLLTHGNAQNEASYPYRRCLTGNFTQNSTYQANLNLLFSTLSTNGPPTNRFFNTSVGRSPNDTVYGLFQCRGDVTNATCRTFLATATRDAERLYCPLAKGAVIWYDEIIFRYSDQPFFSIITSTPNLRLLNLVNIDGDKARFNQLVMSTLRATAALAASSMDELFATQMANFTQDRNIYTLAQCTGDLSNTDCGECLRQATNEIPNCCTDKQGGRVLLPSCIVRYEVYSFYETSIPPPATPTPISTIPSRPLLPSSPPPGERRSSTVLIVAIVAPITVSILLFVMGCCFLRQRAKKRDSAVKEDSVVDEMTTSDSLQFDFKTIEAATNKFSEENRLGEGGFGAVFKGRLDNGQEIAVKRLSRGSLQGSEEFKNEVMLVAKLQHRNLVSGYMSPEYAMHGNFSMKSDIYSFGVLVLEIISGRKNNTFYLSDLAEDILTYAWALWKDGIPLELLDPMLKDNYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFVRSKDNGNTIGSDHSSNKSTKCSVNETSLSELHPR 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22307652 22316501 - MELO3C002489.2.1 Cme12g01459 344676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01459 1112 ProSiteProfiles Protein kinase domain profile. 188 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01459 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Cme12g01459 1112 MobiDBLite consensus disorder prediction 807 826 - -
Cme12g01459 1112 MobiDBLite consensus disorder prediction 1087 1112 - -
Cme12g01459 1112 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 579 955 - -
Cme12g01459 1112 MobiDBLite consensus disorder prediction 37 111 - -
Cme12g01459 1112 ProSitePatterns Protein kinases ATP-binding region signature. 904 926 IPR017441 GO:0005524
Cme12g01459 1112 Gene3D Phosphorylase Kinase; domain 1 148 263 - -
Cme12g01459 1112 Gene3D Phosphorylase Kinase; domain 1 859 958 - -
Cme12g01459 1112 ProSiteProfiles Protein kinase domain profile. 898 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01459 1112 SUPERFAMILY Protein kinase-like (PK-like) 174 495 IPR011009 -
Cme12g01459 1112 CDD STKc_IRAK 194 463 - -
Cme12g01459 1112 MobiDBLite consensus disorder prediction 1 24 - -
Cme12g01459 1112 MobiDBLite consensus disorder prediction 37 82 - -
Cme12g01459 1112 ProSiteProfiles Gnk2-homologous domain profile. 580 685 IPR002902 -
Cme12g01459 1112 Pfam Salt stress response/antifungal 590 682 IPR002902 -
Cme12g01459 1112 Pfam Salt stress response/antifungal 708 795 IPR002902 -
Cme12g01459 1112 MobiDBLite consensus disorder prediction 93 109 - -
Cme12g01459 1112 Gene3D Transferase(Phosphotransferase) domain 1 959 1076 - -
Cme12g01459 1112 SMART serkin_6 188 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01459 1112 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 579 955 - -
Cme12g01459 1112 Gene3D - 698 798 IPR038408 -
Cme12g01459 1112 Gene3D - 579 685 IPR038408 -
Cme12g01459 1112 ProSiteProfiles Gnk2-homologous domain profile. 691 798 IPR002902 -
Cme12g01459 1112 MobiDBLite consensus disorder prediction 807 828 - -
Cme12g01459 1112 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 104 511 - -
Cme12g01459 1112 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 957 1110 - -
Cme12g01459 1112 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 104 511 - -
Cme12g01459 1112 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 957 1110 - -
Cme12g01459 1112 SUPERFAMILY Protein kinase-like (PK-like) 884 1087 IPR011009 -
Cme12g01459 1112 Pfam Protein tyrosine and serine/threonine kinase 901 956 IPR001245 GO:0004672|GO:0006468
Cme12g01459 1112 Pfam Protein tyrosine and serine/threonine kinase 190 460 IPR001245 GO:0004672|GO:0006468
Cme12g01459 1112 Pfam Protein tyrosine and serine/threonine kinase 958 1059 IPR001245 GO:0004672|GO:0006468
Cme12g01459 1112 Gene3D Transferase(Phosphotransferase) domain 1 264 468 - -
Cme12g01459 1112 ProSitePatterns Protein kinases ATP-binding region signature. 194 216 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00405 Cme-Chr1:2871127 Cme12g01459 Cme-Chr12:22307652 3.92E-37 dispersed
Cme12g01457 Cme-Chr12:22299334 Cme12g01459 Cme-Chr12:22307652 4.08E-57 dispersed
Cme12g01459 Cme-Chr12:22307652 Cme12g01417 Cme-Chr12:22003631 9.93E-24 dispersed
Cme12g01461 Cme-Chr12:22321327 Cme12g01459 Cme-Chr12:22307652 4.28E-15 dispersed
Cme12g01458 Cme-Chr12:22303171 Cme12g01459 Cme-Chr12:22307652 8.94E-24 tandem
Cme12g01459 Cme-Chr12:22307652 Cme12g01460 Cme-Chr12:22317779 3.00E-06 tandem
Cme10g01593 Cme-Chr10:21059568 Cme12g01459 Cme-Chr12:22307652 2.83E-31 transposed
Cme05g00356 Cme-Chr5:2833379 Cme12g01459 Cme-Chr12:22307652 1.95E-07 transposed
Cme12g01459 Cme-Chr12:22307652 Cme08g00372 Cme-Chr8:2303496 4.41E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65335 PF07714 PK_Tyr_Ser-Thr 4.20E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01459 - - cmo:103489161 1713.35