Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01470 ATGTTTGGAGCACATGGATTTGAAGATCATCATCATCAGGATGATCTTCTACTGGAGATGACACAGAAAAATTTTGAAACCGAACTCGAAAAATTCGGAGAAGATGAGTTTGAGAGTAGGTCGGTGACAGATGCCATGGATGCTCCTTTGGGTGAAGAACAATGTGATCTTTTGAATCAGAGAAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATTCAGGAAATGGAAGCGTTTTTTAAGGAATGTCCACATCCAGATGACAAGCAAAGAAAACAGCTGAGCCGTGAGTTAGGGCTGGAACCCCTCCAAGTCAAGTTTTGGTTTCAAAACAAGCGCACCCAAATCAAGGCTCAACAAGAACGGCATGAGAATGCAATATTGAAAGCTCAAAACGAGAAATTAAGAGCAGAGAACATGAGGTATAAGGAAGCTCTTACCAATACAAGTTGCCCTAATTGTGGAGGTCCTGCTGCCCTTGGCGAGATGTCCTTTGATGCTCAACATTTGAGAATCGACAATGCACAATTAAGAGACGAGATAGAGAGATTAAACGGTAATAACAAATATGGAGGGAAGGGATGGGGTTCCCATTCTTCGCATATAGTTTCATGTGGAGGGCAGGTTGGAAGGTCATCATTAAAGCCTCAACAATTGCAAGGAGATGATCATTTGTTAGGGGAAATGTATGGAGAGACGACAACAGGAATAATGTTAAAATCGTCATCAGTGACAACTGAAATTGATAAGCCAGTAATTGTTGAGCTTGCAGTTTCAGCCATGGAAGAAGTATGTAGAATGGCTCAAGAAGGTGAGCCATTGTGGGTTATTGGTGAAAACTCCATGGAAATGCTTAATGAAGATGAGTATTTGAGGACTTACTCTACACGAATTGGCCCTAGAATTGTGGGACTAACCTTTGAAGCTTCAAGACAAACTTCTATTCTTGCTTTCAATCATTTAAAACTCGTCCATATTCTCATGGACGTGAATCAATGGTCAACCATATTTTGTGGAATTGTTTCAAGAGCATTGACACTCGAAGTCTTATCAAGTGGAGTTGGTGGCGACTATAATGGAGCTCTACAAATCATGACGGCGGAGTTTCAAGTTCCTTCTCCATTGGTTCCGACGAGAGAAAATTACTTCGTGAGATATTGCAAGCAGCAGGGAGAGGGGAGTTGGGCTGTGGTGGATGTTTCACTTGATTATTTACGTCCTACTCCTACTTCAAGGACTCGAAGACGACCATCTGGTTGCTTAATCCAAGAACTTCCTAATGGCTACTCAAAGGTGACTTGGGTGGAACATGTAGAAGTGGATGATCGAGCAGTACACAATTTATACAAAGGAGTGGTGACATGTGGGCTTGCCTTTGGCGCAAAACGATGGATGGCTACTCTTAGTCGACAATGCCAACGCCTAACCAACTCCTCTTCTACCAATATTCCTGCACTTGACATTTGTGTGGTAACGGGGCAAGAGGGGAGGAAGAGCGTTATGAAGTTAGCTGAGAGAATGGTGAGGAGCTTCTGCAGTGGCGTTGGGGCTGCTACTGCACATAATTGGACCACATTATCCACCATTGATTCCGATGATGTTCGAGTCATGGCGAGAAAGAGCCTCGACGACCCTGGCCGACCTCCTGGAATTGTTCTTAATGCAGCTACTTCTTTCTGGATTCCAATTCCCCCTAACAGAGTCTTCAATTTCCTCCGAGATCAGAACACCCGCAATCAGTGGGATATACTTTCAAATGGTGGATTAGTTCAAGAAATGGCTCGCATTGGCAACGATCGAAACTCAGGAAATTGTGTCTCATTACTTCGTGTTAACAGTGCAAATTCAAGTCAGAGCAACATGTTGATACTACAAGAGAGTTGCAGCGATGACATCAGCGGTTCTTACATTATCTACGCACCGGTGGACACCGTGGCAATGAACATGGTTTTAAGCGGCGGCGACCCTGATTACGTGGCTCTCTTGCCATCTGGATTCGCCATACTCCCTGATGGACCGCCCATCGGACCCGATGGGCCTCCAGGAATTCTCGAGTTCGGCTCCGGTGGTTCCTTGTTGACGGTTGCCTTTCAGATATTGGTTGATTCGGTTCCAACTGCCAAATTGTCTCTTGGCTCGGTGGCCACCGTCAACAGCCTCATCAAGTGCACGGTGGAGCGAATTAGAGCTGCACTCATAAAAAGCGTTTCTATTATATGTGATTGA 2232 44.67 MFGAHGFEDHHHQDDLLLEMTQKNFETELEKFGEDEFESRSVTDAMDAPLGEEQCDLLNQRNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQIKAQQERHENAILKAQNEKLRAENMRYKEALTNTSCPNCGGPAALGEMSFDAQHLRIDNAQLRDEIERLNGNNKYGGKGWGSHSSHIVSCGGQVGRSSLKPQQLQGDDHLLGEMYGETTTGIMLKSSSVTTEIDKPVIVELAVSAMEEVCRMAQEGEPLWVIGENSMEMLNEDEYLRTYSTRIGPRIVGLTFEASRQTSILAFNHLKLVHILMDVNQWSTIFCGIVSRALTLEVLSSGVGGDYNGALQIMTAEFQVPSPLVPTRENYFVRYCKQQGEGSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGYSKVTWVEHVEVDDRAVHNLYKGVVTCGLAFGAKRWMATLSRQCQRLTNSSSTNIPALDICVVTGQEGRKSVMKLAERMVRSFCSGVGAATAHNWTTLSTIDSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFNFLRDQNTRNQWDILSNGGLVQEMARIGNDRNSGNCVSLLRVNSANSSQSNMLILQESCSDDISGSYIIYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPPIGPDGPPGILEFGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIRAALIKSVSIICD 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22385995 22393830 + MELO3C002477.2.1 Cme12g01470 344687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01470 743 Pfam Homeodomain 64 119 IPR001356 GO:0003677
Cme12g01470 743 Gene3D - 324 478 IPR023393 -
Cme12g01470 743 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 26 737 - -
Cme12g01470 743 SMART START_1 257 476 IPR002913 GO:0008289
Cme12g01470 743 SUPERFAMILY Bet v1-like 248 477 - -
Cme12g01470 743 Coils Coil 115 150 - -
Cme12g01470 743 Pfam START domain 258 476 IPR002913 GO:0008289
Cme12g01470 743 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 26 737 IPR042160 -
Cme12g01470 743 CDD homeodomain 63 122 IPR001356 GO:0003677
Cme12g01470 743 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Cme12g01470 743 SUPERFAMILY Bet v1-like 503 731 - -
Cme12g01470 743 ProSiteProfiles START domain profile. 248 479 IPR002913 GO:0008289
Cme12g01470 743 Gene3D - 52 138 - -
Cme12g01470 743 CDD START_ArGLABRA2_like 252 475 - -
Cme12g01470 743 SMART HOX_1 62 125 IPR001356 GO:0003677
Cme12g01470 743 Coils Coil 169 189 - -
Cme12g01470 743 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Cme12g01470 743 SUPERFAMILY Homeodomain-like 51 122 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02549 Cme-Chr11:31886646 Cme12g01470 Cme-Chr12:22385995 0 dispersed
Cme12g01470 Cme-Chr12:22385995 Cme12g02041 Cme-Chr12:25897226 0 dispersed
Cme01g00416 Cme-Chr1:2932684 Cme12g01470 Cme-Chr12:22385995 0 wgd
Cme11g00781 Cme-Chr11:9888700 Cme12g01470 Cme-Chr12:22385995 0 wgd
Cme12g01470 Cme-Chr12:22385995 Cme08g00387 Cme-Chr8:2409975 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42347 PF01852 START 6.40E-49 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01470 K09338 - csv:101212604 1432.54