Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01491 | ATGTCTTGTTCGAATCTGACTATGTGGGTGACTTCAAAACCCACCGTTTCTGATGCATCCTCCCTGTCTTTCCGCTCATTTTTGAGCCCTTTTCAACTTCCTTCCCAGAATTCAACCCCTGCTCGATCATGGTCAGTTTCTCCAATCCATTGCGGTCTTCGGGAACTCCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCATTCTCTGAAGCCTTAGTTGAAGTCCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTTGATGTTCCTTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACTGGTGATAGAGGTCTTTGTGGTGGTTTCAACAATACCATCATTAAGAAAGCTGAAGCTAGAATATCAGAATTGAAGGCACTTGGTCTTGATTACACTGTTATTAGTGTTGGTAAGAAGGGTAACTCTTATTTCCTTCGCCGACCGTACATTCCAGTCGATAAGTTCCTTGAAGGTGGTACTCTTCCCACAGCTAAAGAAGCTCAAGCAATAGCTGATGATGTTTTTTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTATACAAAATTCGTGTCATTGGTAAAATCTGATCCTGTAATTCATACTCTTCTTCCTCTATCACCAAAGGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGACGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTAGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTTTCACCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTTTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCATTGGCTAGTGAACTTGCTGCTAGAATGAGTGCTATGAGTAATGCAACCGATAATGCTTCCGAGCTGAAGAGAACTCTGTCTATTGTGTATAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA | 1122 | 41.53 | MSCSNLTMWVTSKPTVSDASSLSFRSFLSPFQLPSQNSTPARSWSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNTIIKKAEARISELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 22531458 | 22533006 | + | MELO3C002456.2.1 | Cme12g01491 | 344708 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01491 | 373 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 52 | 119 | - | - | |
Cme12g01491 | 373 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 269 | 372 | - | - | |
Cme12g01491 | 373 | TIGRFAM | ATPsyn_F1gamma: ATP synthase F1, gamma subunit | 52 | 372 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cme12g01491 | 373 | Hamap | ATP synthase gamma chain [atpG]. | 50 | 372 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cme12g01491 | 373 | PRINTS | ATP synthase gamma subunit signature | 124 | 143 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cme12g01491 | 373 | PRINTS | ATP synthase gamma subunit signature | 217 | 234 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cme12g01491 | 373 | PRINTS | ATP synthase gamma subunit signature | 319 | 338 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cme12g01491 | 373 | PRINTS | ATP synthase gamma subunit signature | 350 | 371 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cme12g01491 | 373 | Gene3D | - | 120 | 243 | - | - | |
Cme12g01491 | 373 | CDD | F1-ATPase_gamma | 53 | 369 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cme12g01491 | 373 | Pfam | ATP synthase | 53 | 372 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cme12g01491 | 373 | PANTHER | ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC | 1 | 372 | - | - | |
Cme12g01491 | 373 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 1 | 372 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cme12g01491 | 373 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 52 | 372 | IPR035968 | GO:0015986|GO:0045261|GO:0046933 | |
Cme12g01491 | 373 | ProSitePatterns | ATP synthase gamma subunit signature. | 358 | 371 | IPR023632 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme08g00402 | Cme12g01491 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g02250 | Cme-Chr6:29483655 | Cme12g01491 | Cme-Chr12:22531458 | 8.98E-145 | dispersed | |
Cme12g01946 | Cme-Chr12:25376295 | Cme12g01491 | Cme-Chr12:22531458 | 2.79E-27 | transposed | |
Cme12g01491 | Cme-Chr12:22531458 | Cme08g00402 | Cme-Chr8:2482843 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01491 | K02115 | - | csv:101214408 | 682.945 |