Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01491 ATGTCTTGTTCGAATCTGACTATGTGGGTGACTTCAAAACCCACCGTTTCTGATGCATCCTCCCTGTCTTTCCGCTCATTTTTGAGCCCTTTTCAACTTCCTTCCCAGAATTCAACCCCTGCTCGATCATGGTCAGTTTCTCCAATCCATTGCGGTCTTCGGGAACTCCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCATTCTCTGAAGCCTTAGTTGAAGTCCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTTGATGTTCCTTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACTGGTGATAGAGGTCTTTGTGGTGGTTTCAACAATACCATCATTAAGAAAGCTGAAGCTAGAATATCAGAATTGAAGGCACTTGGTCTTGATTACACTGTTATTAGTGTTGGTAAGAAGGGTAACTCTTATTTCCTTCGCCGACCGTACATTCCAGTCGATAAGTTCCTTGAAGGTGGTACTCTTCCCACAGCTAAAGAAGCTCAAGCAATAGCTGATGATGTTTTTTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTATACAAAATTCGTGTCATTGGTAAAATCTGATCCTGTAATTCATACTCTTCTTCCTCTATCACCAAAGGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGACGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTAGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTTTCACCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTTTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCATTGGCTAGTGAACTTGCTGCTAGAATGAGTGCTATGAGTAATGCAACCGATAATGCTTCCGAGCTGAAGAGAACTCTGTCTATTGTGTATAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1122 41.53 MSCSNLTMWVTSKPTVSDASSLSFRSFLSPFQLPSQNSTPARSWSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNTIIKKAEARISELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22531458 22533006 + MELO3C002456.2.1 Cme12g01491 344708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01491 373 Gene3D ATP synthase, gamma subunit, helix hairpin domain 52 119 - -
Cme12g01491 373 Gene3D ATP synthase, gamma subunit, helix hairpin domain 269 372 - -
Cme12g01491 373 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 52 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme12g01491 373 Hamap ATP synthase gamma chain [atpG]. 50 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme12g01491 373 PRINTS ATP synthase gamma subunit signature 124 143 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme12g01491 373 PRINTS ATP synthase gamma subunit signature 217 234 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme12g01491 373 PRINTS ATP synthase gamma subunit signature 319 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme12g01491 373 PRINTS ATP synthase gamma subunit signature 350 371 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme12g01491 373 Gene3D - 120 243 - -
Cme12g01491 373 CDD F1-ATPase_gamma 53 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme12g01491 373 Pfam ATP synthase 53 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme12g01491 373 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 372 - -
Cme12g01491 373 PANTHER ATP SYNTHASE GAMMA CHAIN 1 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme12g01491 373 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 52 372 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cme12g01491 373 ProSitePatterns ATP synthase gamma subunit signature. 358 371 IPR023632 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00402 Cme12g01491 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02250 Cme-Chr6:29483655 Cme12g01491 Cme-Chr12:22531458 8.98E-145 dispersed
Cme12g01946 Cme-Chr12:25376295 Cme12g01491 Cme-Chr12:22531458 2.79E-27 transposed
Cme12g01491 Cme-Chr12:22531458 Cme08g00402 Cme-Chr8:2482843 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01491 K02115 - csv:101214408 682.945