Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01514 ATGGACTCAAAATCCTCCCACCTTCTACTAATCCTTCTCTTCATTTTTTCATTCATCAATCCCTCCCTCCAAGGTTACTACACTCCCGACAAGAAAAACATGAACGTAATCGACTCATGCTGGCGTCAAACCTCCAATTGGGCCAAAAACCGAAAAGCCTTAGCAGACTGTGCAGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACACTGTCACCGACCCATCCGACAACCCTTCAAACCCTAAATATGGAACGCTACGTTACGGTGTGATCCAAGACAAGCCATTATGGATTGTATTTGGGAAGGACATGGTGATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTTCAAGACCATCGATGGACGTGGGGCTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTGCAAGGGGTTAGCCATGTTATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGGAAATCTGGGCTTGTTAGAGACACTGTGTCGCATGTTGGGAAACGGAAAGGGTCTGATGGTGATGCTATTGCTGTGTTTGGTTCTTCACATGTTTGGATTGATCATTGTTATTTAGCACGATGTACTGATGGTCTTATTGATGTTATTCATGCTTCCACTTCTGTCACTATCTCAAATAACTACTTCTCTCAACATGATAAGGTGATGCTGCTTGGACATAATGATGGGTTCACCGATGATAAAATTATGAGGGTCACCATTGTTTTCAACCGCTTTGGCGCTGGTCTCATTGAGAGGATGCCCAGGGTTAGGTTTGGTTATGCCCATGTAGCCAACAATAGATACGACGAGTGGAAAATGTATGCCATTGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTTCCCAAAATTCTTATGCCAAACAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCAGCCCAATTTATACAAAAGCTCAGTCTTTTCCAGTGGCTCCCGGCTCTATGGTTCCTGCTTTGACTGCAAATGCTGGCCCACTTCGCTGTTTCATCGGCAAACCTTGCTAA 1146 44.07 MDSKSSHLLLILLFIFSFINPSLQGYYTPDKKNMNVIDSCWRQTSNWAKNRKALADCAVGYGKDAIGGKFGTIYTVTDPSDNPSNPKYGTLRYGVIQDKPLWIVFGKDMVIVLKNELMVNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKSGLVRDTVSHVGKRKGSDGDAIAVFGSSHVWIDHCYLARCTDGLIDVIHASTSVTISNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVASQNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCSPIYTKAQSFPVAPGSMVPALTANAGPLRCFIGKPC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22681442 22683416 + MELO3C002431.2.1 Cme12g01514 344731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01514 381 SMART amb_all 108 305 IPR002022 -
Cme12g01514 381 Pfam Pectate lyase 115 299 IPR002022 -
Cme12g01514 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cme12g01514 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Cme12g01514 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Cme12g01514 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Cme12g01514 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Cme12g01514 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Cme12g01514 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Cme12g01514 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Cme12g01514 381 PANTHER PECTATE LYASE 16-RELATED 26 379 - -
Cme12g01514 381 PANTHER PECTATE LYASE 18-RELATED 26 379 IPR045032 GO:0030570
Cme12g01514 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
Cme12g01514 381 Gene3D - 34 374 IPR012334 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00423 Cme12g01514 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01514 Cme-Chr12:22681442 Cme12g01634 Cme-Chr12:23484887 7.49E-148 dispersed
Cme12g02022 Cme-Chr12:25778249 Cme12g01514 Cme-Chr12:22681442 2.89E-109 transposed
Cme12g01514 Cme-Chr12:22681442 Cme08g00423 Cme-Chr8:2582156 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01514 K01728 - csv:101211379 759.599