Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01545 ATGAAATTATCTGTTCGAAATGACTGCGGATCGTCGATTTCTGTGATTTCTGGGCTAATTAGGATTTTGGTGAATGTGTATGATCTCTTTATAATGGGCGTCTCCGACACTATGTTTAACGAGTCAGGAATTGGGTATTCGGTTGTTTCCAGAAAGGAAAATTCAAAAGGACGGTGCCCGCATGGTTGGATTATTAGCCCAAGCAAGACTAAGTGCTTTGGTTTCATGTACAGCCCTAAATCATGGAATGATTCAGAGACCCAATGTAATAGTTTTGGTGGGAACTTAGCAGCTCTGGTGACATATCAAGAGTTTAGTTATGCACAAAATCTGTGTAATGGAACTCTTGGTGGCTGTTGGGTTGGTGGCAGAGCATCCAACTCTTCGAATGATTTCGTTTGGAAATGGTCAGATAATGTTTCGAAGTGGAACGATTCCATTTTTCCCAGTGCAACTTTGCAATCAAACTGCAAAAATGCCTCTTGCCACCGAAATGAATCGGTTGAAACATGTACTTTAATATTTGGTGGACCAGCAACACCATTCCTTAGGGACGAGAAATGCAACAGTTCTCACCCTTTTATTTGCATGATAAACCTAGATGATAGATGCCATCGAATGCACTGTCACAAGGAGTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACAACTTTAGCTGTGGTGATTTGGCTTCTTGCCCACAAGAGGAGCAAAAAGCGGAGAAGGTCGCGGAAGCCATCTAACCCTGCAGCTTCTGCACTGGTACCGCCTTTGTGGAGGGTGTTTACCAAAGAAGAGCTAAGATCGATGACAAAAAACTTCAGTGAGGGAAACCGTCTTCTTGGAGATGCAAAAACAGGTGGTACATACAGTGGACTTCTACCTGATGGTTCAAGAGTTGCAATTAAAAGGTTGAAGAAGTCCAGCTTTCAGAGGAAAAAGGAGTTCCATTCAGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAATTTAGTTGCCCTGAAAGGATGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTGGATAGATGGCTTCATCATGTACCAAGAGGTGGTCGAATCTTAGATTGGACTATGAGAATGAAAATTGCCACGACTCTTGCCCAAGGGATTGCGTTCCTTCACGACAAGGTCAAGCCACATGTGGTACATCGTGATATCCGTGCGAGTAATGTGCTTCTCGATGAAGAATTTGGAGCACATCTGATGGGAGTTGGGCTATCAAAATTGGTAGCATATGAAGTGATGCATGAGAGGACAGTGATGGCTGGAGGAACCTATGGATACCTTGCTCCTGAATTTGTCTACAGAAACGAGCTAACCACAAAGAGTGATGTCTACAGTTTTGGGGTCCTATTGCTTGAAATAGTAACTGGACGAAGGCCCGCACAGGCGGTTGATTCGGTTGGTTGGCAGAGCATATTTGAATGGGCAACCCCCCTCGTGCAGGCTCACCGTTACCTAGATCTCTTGGATCCTCATATAACAGTCACTTCAACTTCTGAAATCCCGGAGGCTGGCATTGTTCAGAAGGTTGTGGACCTTGTTTATGCTTGCACACAGCACGTCCCGTCTATGCGACCAAGAATGTCACACGTCGTTCATCAACTGCAACAATTGGCTCCCTCACCTCTCACTACGAAGTAA 1704 44.31 MKLSVRNDCGSSISVISGLIRILVNVYDLFIMGVSDTMFNESGIGYSVVSRKENSKGRCPHGWIISPSKTKCFGFMYSPKSWNDSETQCNSFGGNLAALVTYQEFSYAQNLCNGTLGGCWVGGRASNSSNDFVWKWSDNVSKWNDSIFPSATLQSNCKNASCHRNESVETCTLIFGGPATPFLRDEKCNSSHPFICMINLDDRCHRMHCHKEYLVILAVVSGLIFCTTLAVVIWLLAHKRSKKRRRSRKPSNPAASALVPPLWRVFTKEELRSMTKNFSEGNRLLGDAKTGGTYSGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRILDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITVTSTSEIPEAGIVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTTK 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22912626 22917100 - MELO3C002402.2.1 Cme12g01545 344762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01545 567 CDD CLECT 71 196 - -
Cme12g01545 567 ProSiteProfiles Protein kinase domain profile. 279 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01545 567 SUPERFAMILY Protein kinase-like (PK-like) 252 556 IPR011009 -
Cme12g01545 567 Gene3D - 45 200 IPR016186 -
Cme12g01545 567 Gene3D Transferase(Phosphotransferase) domain 1 355 561 - -
Cme12g01545 567 SMART CLECT_2 59 197 IPR001304 -
Cme12g01545 567 SMART tyrkin_6 278 556 IPR020635 GO:0004713|GO:0006468
Cme12g01545 567 Gene3D Phosphorylase Kinase; domain 1 258 354 - -
Cme12g01545 567 ProSitePatterns Tyrosine protein kinases specific active-site signature. 401 413 IPR008266 GO:0004672|GO:0006468
Cme12g01545 567 Pfam Protein tyrosine and serine/threonine kinase 285 556 IPR001245 GO:0004672|GO:0006468
Cme12g01545 567 SUPERFAMILY C-type lectin-like 59 198 IPR016187 -
Cme12g01545 567 PANTHER - 23 560 - -
Cme12g01545 567 ProSiteProfiles C-type lectin domain profile. 68 197 IPR001304 -
Cme12g01545 567 Pfam Lectin C-type domain 79 197 IPR001304 -
Cme12g01545 567 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 23 560 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01545 Cme-Chr12:22912626 Cme05g00309 Cme-Chr5:2296795 2.56E-61 dispersed
Cme12g01545 Cme-Chr12:22912626 Cme02g01367 Cme-Chr2:19773821 2.77E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65337 PF07714 PK_Tyr_Ser-Thr 2.00E-39 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01545 - - csv:101218425 1072.77