Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01562 ATGCTTTCCAGAGTTGGGAACGTTCTTTGGATGGAAAATCGCGAGGATGAGGATTCGTCTTCCTGGACTAAAAACAACAACGACCACAACCATCTCAACCACCCTGTTAATTGCTCTGTTTTGAACAACAAAGACGAAATCACCTCTCTCTCTACCTTCAAATCCATGCTTGAGGTTGAAGACGACTGGTGTATCTCTGCTAATGCTCTCCATAACCATAACCACCACACCGACATCAATGACATTACCTTCTCTCAAAATTTCACCGACCCACCTGATAATTTGTTGCTCCCCCCTGGAGATTCCTCCTCTTCTTGTTCCCCTTCTTCTTCTGTGTTTAATAACATTGACCCATCTCAATTGCGTTTCTTCTTGCCTCCAACTCGCACTTTGTCTTCACTTCATAAGGTAGTTTCTAACAACCCTTTAGAACATGGCTTCGATTTGGGAGCAGAGGTTGGGTTTCTTGACGTCCAAGCTTCAAATGCTTCGACTCTGCTCAACGATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACTAGTCAGATGAACACTCCTAATTTGTGCTTGGGTTCTCAATTGACAGCACAAAACGTGGCCCCAATGGGTGACAATTGTTCGGGATTAGCGGGATTTCAGAGTTTTGATGAGAATTTGGGAAATGCTCTGCTTTTGAATCGGTCTAAGCTTTTGAGACCACTTGAATCTTTTCCCTCAGTGGGAGCTCAGCCGACTCTTTTCCAGAAGAGGGCTGCTCTAAGGAAGAGTTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTTCTCAAATAGGATTGAAGGGGGCATTGGGAAAAATGAAATGGGTGACGAAAATGGGAAGAAGAGGAAAATGATTTATGCAGATGAATTGCAAGATACTAGCATTGACACATCCCGTTTCAATTACGATTCTGATGACTTTACCGAGAATACTAACACTAAATTGGATGAGAGTGGTAGAAATGTTGGAAATACATCTAACGCCAATAGTACAGTAACCGGCGGCGACCAGAAGGGGAAGAAAAAAGGACTTCCAGCGAAGAATTTGATGGCCGAGAGACGCCGGAGGAAGAAGCTCAATGATAGGCTGTACATGCTGAGGTCCGTTGTTCCAAAAATCAGCAAAATGGATAGAGCTTCAATTCTTGGAGATGCGATTGAGTACTTGAAGGAATTACTGCAAAGAATCAACGACCTCCATAATGAATTGGAGTTTTCCCCTTCTGGGGCTGCCTTGACGCCGGGCGCAAGCTTCCATCCCTTGACTCCAACACCACCAAGCCTCTCGAGTCGTATAAAGGAGGAGCTTTGTCCTAGCTCATTTCCCAGCCCAAACGGCCAACCTGCAAGGGTAAATAAATTCCTTATCCTGGAACAACTTTCCTTTGCCCTTCAAATGATCCATGACTCTAGCATTTTGCAATTGTATGATTTGCTATGA 1488 44.69 MLSRVGNVLWMENREDEDSSSWTKNNNDHNHLNHPVNCSVLNNKDEITSLSTFKSMLEVEDDWCISANALHNHNHHTDINDITFSQNFTDPPDNLLLPPGDSSSSCSPSSSVFNNIDPSQLRFFLPPTRTLSSLHKVVSNNPLEHGFDLGAEVGFLDVQASNASTLLNDGGGLLTGFTDLSPTSQMNTPNLCLGSQLTAQNVAPMGDNCSGLAGFQSFDENLGNALLLNRSKLLRPLESFPSVGAQPTLFQKRAALRKSLADKGSNLGVLSPDGGWFSNRIEGGIGKNEMGDENGKKRKMIYADELQDTSIDTSRFNYDSDDFTENTNTKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFSPSGAALTPGASFHPLTPTPPSLSSRIKEELCPSSFPSPNGQPARVNKFLILEQLSFALQMIHDSSILQLYDLL 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23013361 23016702 - MELO3C002385.2.1 Cme12g01562 344779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01562 495 Pfam Helix-loop-helix DNA-binding domain 366 408 IPR011598 GO:0046983
Cme12g01562 495 MobiDBLite consensus disorder prediction 327 359 - -
Cme12g01562 495 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 101 467 - -
Cme12g01562 495 Coils Coil 398 418 - -
Cme12g01562 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 424 IPR036638 GO:0046983
Cme12g01562 495 SMART finulus 365 414 IPR011598 GO:0046983
Cme12g01562 495 CDD bHLH_AtAMS_like 362 426 - -
Cme12g01562 495 MobiDBLite consensus disorder prediction 327 352 - -
Cme12g01562 495 Gene3D - 353 422 IPR036638 GO:0046983
Cme12g01562 495 PANTHER BHLH TRANSCRIPTIONAL FACTOR 101 467 - -
Cme12g01562 495 MobiDBLite consensus disorder prediction 10 24 - -
Cme12g01562 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983
Cme12g01562 495 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01562 - - - csv:101206422 848.966
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00212 Cme-Chr4:1591415 Cme12g01562 Cme-Chr12:23013361 6.71E-22 dispersed
Cme06g01892 Cme-Chr6:22430202 Cme12g01562 Cme-Chr12:23013361 3.71E-101 dispersed
Cme08g00704 Cme-Chr8:4701993 Cme12g01562 Cme-Chr12:23013361 3.25E-23 dispersed
Cme12g01562 Cme-Chr12:23013361 Cme06g02389 Cme-Chr6:31048084 1.21E-14 dispersed
Cme12g01562 Cme-Chr12:23013361 Cme03g01779 Cme-Chr3:26288771 1.37E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g28 . Blo16g00289 . . . . Bma06g00283 . . Cmo18g00238 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00527 Csa01g00990 Chy12g01144 Cme12g01562 . . Bda11g01575 . . . . . Sed08g2407 . . . Cma18g00292 Car13g00673 Car18g00249 Cpe09g00942 . Bhi08g01538 Tan05g3011 Cmetu06g0036 Lac10g0613 Hepe07g2082 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011005 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42351 PF00010 HLH 1.80E-09 No_clan Cme TF