Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01565 ATGGCAGCTTTTTCATATCAATACCAACCATTTCTTCTTGACTCTATTTTCTTGCACAATAATCCTCTTAAAGTGGGAGGCTTTTTTGATGAACAAAATTTCAACACAAATTGTTTCTCCCAGTTTTACCCTCAAGATCAACCGCAGCAGCAGCAGCAGCAGCAGCAACAACAACCCATTTACCATTTTCCTGACCTCTCTAAACAAAGCCCTGAATCTTCAGCTTTGGTCGACCGGTCCGACGTCAGCGCTGAGCTGCCAGTTGGACATCGGTTGAAACCGGCGGTTACTGTAACCGTCACTTCCCCTTGTAGTAAGAAAAGGAAGAGTCGGAATAATTCCTCCGCCTCCTCCGCCCAATCCAAGGGGACTACTGATCATCAGAGCAATGGGAAGAAGCCGAAAAATAAAGGAGAATTAGATGAAGGGAAAGAAAAAGATCAAAAGGCCAAAAATGGGAAGAAATTATTAGAGGAGAAGATAAAAGATTCAGAAGATGGTGGTGCAACCACTGGTTACATTCATGTCAGAGCTAGAAGGGGCCAAGCCACTGATAGCCACAGTCTTGCTGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTGCAACGCCTTGTTCCCGGTTGCGACAAGGTTACAGGGAAGGCCCTTATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTAGACGGCCTCATGATCCAACCAGAGACGACGTCGTTGAGTAGCATAACGCCAACACTACCAGCGATGGCGCAATGCAGCGTCGTACCACCGCAGGCGTTGATCGACACGACGCCTCCGGCAACCCCATCTCCGGCAATCTCCACCGGAAATAATTTTCCCTTAATGGACCCTTCAGCTAATTTGTTTCTACTTCAACAAGGGATAAGCCCAAACAACGGTTACTCTCAATCGTCACAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAAAGAAAGCAGCTTCTTATTTCATCTGGAATTGGCGACAACTTATGTTACTTCCATTAA 1107 44.9 MAAFSYQYQPFLLDSIFLHNNPLKVGGFFDEQNFNTNCFSQFYPQDQPQQQQQQQQQQPIYHFPDLSKQSPESSALVDRSDVSAELPVGHRLKPAVTVTVTSPCSKKRKSRNNSSASSAQSKGTTDHQSNGKKPKNKGELDEGKEKDQKAKNGKKLLEEKIKDSEDGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETTSLSSITPTLPAMAQCSVVPPQALIDTTPPATPSPAISTGNNFPLMDPSANLFLLQQGISPNNGYSQSSQDNVKVSSWDVEDQKRKQLLISSGIGDNLCYFH 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23037307 23039499 + MELO3C002383.2.1 Cme12g01565 344782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01565 368 MobiDBLite consensus disorder prediction 128 166 - -
Cme12g01565 368 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 368 IPR024097 GO:0006355
Cme12g01565 368 SMART finulus 188 238 IPR011598 GO:0046983
Cme12g01565 368 Pfam Helix-loop-helix DNA-binding domain 186 233 IPR011598 GO:0046983
Cme12g01565 368 MobiDBLite consensus disorder prediction 97 169 - -
Cme12g01565 368 CDD bHLH_AtBPE_like 172 257 - -
Cme12g01565 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 248 IPR036638 GO:0046983
Cme12g01565 368 Gene3D - 179 249 IPR036638 GO:0046983
Cme12g01565 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 232 IPR011598 GO:0046983
Cme12g01565 368 MobiDBLite consensus disorder prediction 98 127 - -
Cme12g01565 368 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00114 Cme-Chr11:1054206 Cme12g01565 Cme-Chr12:23037307 4.04E-39 dispersed
Cme12g01565 Cme-Chr12:23037307 Cme12g01876 Cme-Chr12:24949054 1.72E-37 dispersed
Cme12g01565 Cme-Chr12:23037307 Cme02g02101 Cme-Chr2:26811694 3.52E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42352 PF00010 HLH 7.30E-07 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01565 - - csv:101205943 623.624