Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01565 | ATGGCAGCTTTTTCATATCAATACCAACCATTTCTTCTTGACTCTATTTTCTTGCACAATAATCCTCTTAAAGTGGGAGGCTTTTTTGATGAACAAAATTTCAACACAAATTGTTTCTCCCAGTTTTACCCTCAAGATCAACCGCAGCAGCAGCAGCAGCAGCAGCAACAACAACCCATTTACCATTTTCCTGACCTCTCTAAACAAAGCCCTGAATCTTCAGCTTTGGTCGACCGGTCCGACGTCAGCGCTGAGCTGCCAGTTGGACATCGGTTGAAACCGGCGGTTACTGTAACCGTCACTTCCCCTTGTAGTAAGAAAAGGAAGAGTCGGAATAATTCCTCCGCCTCCTCCGCCCAATCCAAGGGGACTACTGATCATCAGAGCAATGGGAAGAAGCCGAAAAATAAAGGAGAATTAGATGAAGGGAAAGAAAAAGATCAAAAGGCCAAAAATGGGAAGAAATTATTAGAGGAGAAGATAAAAGATTCAGAAGATGGTGGTGCAACCACTGGTTACATTCATGTCAGAGCTAGAAGGGGCCAAGCCACTGATAGCCACAGTCTTGCTGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTGCAACGCCTTGTTCCCGGTTGCGACAAGGTTACAGGGAAGGCCCTTATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTAGACGGCCTCATGATCCAACCAGAGACGACGTCGTTGAGTAGCATAACGCCAACACTACCAGCGATGGCGCAATGCAGCGTCGTACCACCGCAGGCGTTGATCGACACGACGCCTCCGGCAACCCCATCTCCGGCAATCTCCACCGGAAATAATTTTCCCTTAATGGACCCTTCAGCTAATTTGTTTCTACTTCAACAAGGGATAAGCCCAAACAACGGTTACTCTCAATCGTCACAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAAAGAAAGCAGCTTCTTATTTCATCTGGAATTGGCGACAACTTATGTTACTTCCATTAA | 1107 | 44.9 | MAAFSYQYQPFLLDSIFLHNNPLKVGGFFDEQNFNTNCFSQFYPQDQPQQQQQQQQQQPIYHFPDLSKQSPESSALVDRSDVSAELPVGHRLKPAVTVTVTSPCSKKRKSRNNSSASSAQSKGTTDHQSNGKKPKNKGELDEGKEKDQKAKNGKKLLEEKIKDSEDGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETTSLSSITPTLPAMAQCSVVPPQALIDTTPPATPSPAISTGNNFPLMDPSANLFLLQQGISPNNGYSQSSQDNVKVSSWDVEDQKRKQLLISSGIGDNLCYFH | 368 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 23037307 | 23039499 | + | MELO3C002383.2.1 | Cme12g01565 | 344782 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01565 | 368 | MobiDBLite | consensus disorder prediction | 128 | 166 | - | - | |
Cme12g01565 | 368 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 368 | IPR024097 | GO:0006355 | |
Cme12g01565 | 368 | SMART | finulus | 188 | 238 | IPR011598 | GO:0046983 | |
Cme12g01565 | 368 | Pfam | Helix-loop-helix DNA-binding domain | 186 | 233 | IPR011598 | GO:0046983 | |
Cme12g01565 | 368 | MobiDBLite | consensus disorder prediction | 97 | 169 | - | - | |
Cme12g01565 | 368 | CDD | bHLH_AtBPE_like | 172 | 257 | - | - | |
Cme12g01565 | 368 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 180 | 248 | IPR036638 | GO:0046983 | |
Cme12g01565 | 368 | Gene3D | - | 179 | 249 | IPR036638 | GO:0046983 | |
Cme12g01565 | 368 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 182 | 232 | IPR011598 | GO:0046983 | |
Cme12g01565 | 368 | MobiDBLite | consensus disorder prediction | 98 | 127 | - | - | |
Cme12g01565 | 368 | PANTHER | BASIC HELIX LOOP HELIX PROTEIN BHLH8 | 1 | 368 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme11g00114 | Cme-Chr11:1054206 | Cme12g01565 | Cme-Chr12:23037307 | 4.04E-39 | dispersed | |
Cme12g01565 | Cme-Chr12:23037307 | Cme12g01876 | Cme-Chr12:24949054 | 1.72E-37 | dispersed | |
Cme12g01565 | Cme-Chr12:23037307 | Cme02g02101 | Cme-Chr2:26811694 | 3.52E-33 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42352 | PF00010 | HLH | 7.30E-07 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01565 | - | - | csv:101205943 | 623.624 |