Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01566 ATGGGTTGCGTTCTTGGCACACCAGCCGCCGACGCTCGCCTGGGCCCATCCGGACCTCCCCGTCGCCGTCGCACCACGGATCACCTTTCTCATATCCACGGAGTTAACAAACACACAACTTCATTAGAAAATCAGGGAGTTCAGCAGGACGTGGATTCCTTCTCTGTAGAGCGTCGGAGGCCTTCGCCGGGCCTTTGCCACAGGAATGAGCAAGGTTGGCCGTCTTGGCTACTGGCAGTCGCCGGCGAGGTTATCCAAGGATGGACGCCTCGTCGAGCTAATACGTTTGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAGGCGAGGGATCTTATTACGGGGAAAATTGTAGCTTTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGTGTAAGGTTTATGGCCAGAGAGATTTTGGTTCTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTTGAAGGCTTGGTTACTTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTTGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCATTGTCACAACCGAGGTGTCTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGGTTAGCTACTTTCTTTGATCCTGAACAGAACCAACATATGACTAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTACTTGGAGCGACTCTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGGAGGCCGATCATGCCAGGAAGGACAGAGGTTGAACAACTCCATAAGATATTTAAATTATGTGGTTCTCCATCCGAGGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTATTTAAACCCCAACAACCATACAAACGCTGCATTGCAGAAACTTTCAAAGATTTTCCATCTTCTTCTCTACCTCTTATTGAATCTCTCCTTTCAATGGACCCCGATGGGAGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTACTACCGAGCCTCTTGCTTGTGAACCATCAAGTCTACCAAAATACCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGAGGTCTAAATGGGAAATCAACAGCTGTTGACGGTGGTGGAAGGAGAGTAAGAGTACGGGATCGGGTCGGTCGTGCTGTCCCAGCTCCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAATTGCGACAAATATAAATGGTAAGAGCAAGAGCGAGAAGTTTCCTCCACCTCATCAAGATGGGGCCGTCGGGTACCCGCCACACGATACGTCCCAGAGGGGCCATCTATCATTTGGGGCAGCTGATACTTCATTCAGCTCCTCCATTTTTAGTTCAAAGTCAGGATCTATTAAAAGTTCAGTAGCTCCCGGGGGACCTTCTCGGAGGAAGAAAGCAGATAAAGATAACCCCTCAATGTCTTCATCTCGAAAATTCATCCGTGCATTGAAGCCATCAATCGGGTTATCATTGGATCTGTTGTTTAGGGGTAAATAA 1686 47.09 MGCVLGTPAADARLGPSGPPRRRRTTDHLSHIHGVNKHTTSLENQGVQQDVDSFSVERRRPSPGLCHRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQNQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALNSEFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLNGKSTAVDGGGRRVRVRDRVGRAVPAPEANAEIQANLDRWRIATNINGKSKSEKFPPPHQDGAVGYPPHDTSQRGHLSFGAADTSFSSSIFSSKSGSIKSSVAPGGPSRRKKADKDNPSMSSSRKFIRALKPSIGLSLDLLFRGK 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23051938 23056013 + MELO3C002382.2.1 Cme12g01566 344783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01566 561 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Cme12g01566 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Cme12g01566 561 Gene3D Phosphorylase Kinase; domain 1 83 178 - -
Cme12g01566 561 MobiDBLite consensus disorder prediction 493 518 - -
Cme12g01566 561 ProSiteProfiles Protein kinase domain profile. 96 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01566 561 PANTHER CELL DIVISION PROTEIN KINASE 54 523 - -
Cme12g01566 561 CDD STKc_CDK9_like 96 380 - -
Cme12g01566 561 MobiDBLite consensus disorder prediction 409 430 - -
Cme12g01566 561 SMART serkin_6 96 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01566 561 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 54 523 - -
Cme12g01566 561 SUPERFAMILY Protein kinase-like (PK-like) 89 385 IPR011009 -
Cme12g01566 561 MobiDBLite consensus disorder prediction 1 26 - -
Cme12g01566 561 MobiDBLite consensus disorder prediction 464 542 - -
Cme12g01566 561 Pfam Protein kinase domain 96 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01566 561 Gene3D Transferase(Phosphotransferase) domain 1 179 419 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00153 Cme-Chr2:1140221 Cme12g01566 Cme-Chr12:23051938 0 dispersed
Cme06g00688 Cme-Chr6:4487424 Cme12g01566 Cme-Chr12:23051938 0 dispersed
Cme10g01289 Cme-Chr10:13887860 Cme12g01566 Cme-Chr12:23051938 0 dispersed
Cme11g01212 Cme-Chr11:18344453 Cme12g01566 Cme-Chr12:23051938 0 dispersed
Cme12g01566 Cme-Chr12:23051938 Cme12g01970 Cme-Chr12:25535067 0 dispersed
Cme12g01566 Cme-Chr12:23051938 Cme05g01749 Cme-Chr5:26533664 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65339 PF00069 Pkinase 2.10E-67 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01566 K08819 - csv:101205716 1048.5