Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01579 TCTCAAAGCTCCTACCCCTTAAGCCTTGACCTTCCATCTCTCTCTAAGTTCTCTTTTCTCTTTCTTCTCTTGAATGCTTTAAACCAGACCAAGAATGACATCTTACTAATAGTTCCAATCTTCTTGGAAGGCCAACATCCAACTCCTTTCAAAGAAATGGCATCATCAACCTCAGGATCATCAAAGAGAGCCAGAGGAACTCATAATGGTAACACTCAACCAGTTTCTTGTCTTGTAGATGGATGCAATTCAGATCTAAGCAACTGTAGAGATTACCATAGACGCCATAAAGTTTGTGAACTCCATTCAAAGACTCCTCAAGTTACAATTGCTGGCTTGAAACAGAGATTTTGCCAGCAGTGTAGTAGGTTTCATTCACTTGAGGAATTTGACGAAGGAAAGAGAAGCTGTCGGAAACGGCTCGATGGCCATAACCGGCGACGGAGGAAGCCTCAGACTGACCTCTTGCCTCGATCTGCTGCCGGTCCTTTCTCCTATCATCAAGGACCCCCGTTGTTGCCATTTACGAGCTCTCAAGTGTTTCCATCAACCACCGTGAGTAGCCACGGGTGGTCGTCCGGAGGCAGCGACAACGCAACGGATCCCGGCGTCCACCACAACCGGAACCCACAACTAAATTTCTTGGAAAAACAGCAGAGCATATTTGTAGAAACATCCGACCAAACCAACAACATCAACAACTACAAAGCCTCGCCCCCGTTAGGGCTTTTGCACGGCGGAGGAGGCGGCAGCGAAAGGAACAAGATGATATACGACAGATTCAGAATTGGGATTAATGAATCAGATTGTGCTCTCTCTCTTCTGTCATCACCACAGACACAGATTCAGAGTGATCATCAGCCACAACAACAACAGCAACAGCAACGTAACGCCGCCATTTCTTTGCTCCATCCATTAAGTACTACCCATCAAAATGCTTTCGACAATTCTTCCGATACTTCTTCTTCTTCTGTTCAGATTTCAAATGACACTCATCACCATCATCACCATCACCATCATCATCATCATCCTCATGGAGTTCTTAATTTCTCCGGGATCTTTGGAATTTCTTCCGACAATCCTGGAAATCAATCCCCTTCTACTCTTCCTTTTCATTGGGAGTAG 1125 45.33 SQSSYPLSLDLPSLSKFSFLFLLLNALNQTKNDILLIVPIFLEGQHPTPFKEMASSTSGSSKRARGTHNGNTQPVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIAGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQTDLLPRSAAGPFSYHQGPPLLPFTSSQVFPSTTVSSHGWSSGGSDNATDPGVHHNRNPQLNFLEKQQSIFVETSDQTNNINNYKASPPLGLLHGGGGGSERNKMIYDRFRIGINESDCALSLLSSPQTQIQSDHQPQQQQQQQRNAAISLLHPLSTTHQNAFDNSSDTSSSSVQISNDTHHHHHHHHHHHHPHGVLNFSGIFGISSDNPGNQSPSTLPFHWE 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23147562 23150337 + MELO3C002370.2.1 Cme12g01579 344796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01579 374 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 51 374 - -
Cme12g01579 374 MobiDBLite consensus disorder prediction 353 374 - -
Cme12g01579 374 MobiDBLite consensus disorder prediction 331 346 - -
Cme12g01579 374 Gene3D - 68 138 IPR036893 GO:0003677|GO:0005634
Cme12g01579 374 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 374 IPR044817 GO:0003677
Cme12g01579 374 MobiDBLite consensus disorder prediction 277 297 - -
Cme12g01579 374 Pfam SBP domain 77 150 IPR004333 GO:0003677
Cme12g01579 374 MobiDBLite consensus disorder prediction 184 208 - -
Cme12g01579 374 MobiDBLite consensus disorder prediction 310 328 - -
Cme12g01579 374 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677
Cme12g01579 374 MobiDBLite consensus disorder prediction 51 70 - -
Cme12g01579 374 MobiDBLite consensus disorder prediction 141 169 - -
Cme12g01579 374 SUPERFAMILY SBT domain 75 156 IPR036893 GO:0003677|GO:0005634
Cme12g01579 374 MobiDBLite consensus disorder prediction 310 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01579 - - - csv:101221267 549.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01786 Cme-Chr6:20873962 Cme12g01579 Cme-Chr12:23147562 1.39E-46 dispersed
Cme11g02227 Cme-Chr11:29499556 Cme12g01579 Cme-Chr12:23147562 1.54E-33 dispersed
Cme12g01333 Cme-Chr12:21335535 Cme12g01579 Cme-Chr12:23147562 3.18E-37 dispersed
Cme12g01579 Cme-Chr12:23147562 Cme12g01922 Cme-Chr12:25258035 1.03E-34 dispersed
Cme11g02326 Cme-Chr11:30336669 Cme12g01579 Cme-Chr12:23147562 3.15E-49 wgd
Cme12g01579 Cme-Chr12:23147562 Cme02g02077 Cme-Chr2:26689297 1.21E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g01038 . 181 985 SBP-box Gene Family AT2G47070 53.2 1.3e-223 773.1
Cme04g01038 . 25 985 SBP-box Gene Family AT3G60030 53.1 6.4e-260 894.0
Cme12g01579 . 56 191 SBP-box Gene Family AT5G50570 66.4 5.3e-45 178.7
Cme11g02326 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.3e-40 164.1
Cme12g01922 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.3e-41 166.8
Cme04g01038 . 181 985 SBP-box Gene Family AT2G47070 53.2 1.3e-223 773.1
Cme12g01922 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.3e-41 166.8
Cme04g01038 . 25 985 SBP-box Gene Family AT3G60030 53.1 6.4e-260 894.0
Cme12g01579 . 56 191 SBP-box Gene Family AT5G50570 66.4 5.3e-45 178.7
Cme11g02326 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.3e-40 164.1
Cme12g01579 . 56 191 SBP-box Gene Family AT5G50670 66.4 5.3e-45 178.7
Cme11g02326 . 15 163 SBP-box Gene Family AT5G50670 55.9 1.3e-40 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011451 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42353 PF03110 SBP 7.70E-31 No_clan Cme TF