Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01579 TCTCAAAGCTCCTACCCCTTAAGCCTTGACCTTCCATCTCTCTCTAAGTTCTCTTTTCTCTTTCTTCTCTTGAATGCTTTAAACCAGACCAAGAATGACATCTTACTAATAGTTCCAATCTTCTTGGAAGGCCAACATCCAACTCCTTTCAAAGAAATGGCATCATCAACCTCAGGATCATCAAAGAGAGCCAGAGGAACTCATAATGGTAACACTCAACCAGTTTCTTGTCTTGTAGATGGATGCAATTCAGATCTAAGCAACTGTAGAGATTACCATAGACGCCATAAAGTTTGTGAACTCCATTCAAAGACTCCTCAAGTTACAATTGCTGGCTTGAAACAGAGATTTTGCCAGCAGTGTAGTAGGTTTCATTCACTTGAGGAATTTGACGAAGGAAAGAGAAGCTGTCGGAAACGGCTCGATGGCCATAACCGGCGACGGAGGAAGCCTCAGACTGACCTCTTGCCTCGATCTGCTGCCGGTCCTTTCTCCTATCATCAAGGACCCCCGTTGTTGCCATTTACGAGCTCTCAAGTGTTTCCATCAACCACCGTGAGTAGCCACGGGTGGTCGTCCGGAGGCAGCGACAACGCAACGGATCCCGGCGTCCACCACAACCGGAACCCACAACTAAATTTCTTGGAAAAACAGCAGAGCATATTTGTAGAAACATCCGACCAAACCAACAACATCAACAACTACAAAGCCTCGCCCCCGTTAGGGCTTTTGCACGGCGGAGGAGGCGGCAGCGAAAGGAACAAGATGATATACGACAGATTCAGAATTGGGATTAATGAATCAGATTGTGCTCTCTCTCTTCTGTCATCACCACAGACACAGATTCAGAGTGATCATCAGCCACAACAACAACAGCAACAGCAACGTAACGCCGCCATTTCTTTGCTCCATCCATTAAGTACTACCCATCAAAATGCTTTCGACAATTCTTCCGATACTTCTTCTTCTTCTGTTCAGATTTCAAATGACACTCATCACCATCATCACCATCACCATCATCATCATCATCCTCATGGAGTTCTTAATTTCTCCGGGATCTTTGGAATTTCTTCCGACAATCCTGGAAATCAATCCCCTTCTACTCTTCCTTTTCATTGGGAGTAG 1125 45.33 SQSSYPLSLDLPSLSKFSFLFLLLNALNQTKNDILLIVPIFLEGQHPTPFKEMASSTSGSSKRARGTHNGNTQPVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIAGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQTDLLPRSAAGPFSYHQGPPLLPFTSSQVFPSTTVSSHGWSSGGSDNATDPGVHHNRNPQLNFLEKQQSIFVETSDQTNNINNYKASPPLGLLHGGGGGSERNKMIYDRFRIGINESDCALSLLSSPQTQIQSDHQPQQQQQQQRNAAISLLHPLSTTHQNAFDNSSDTSSSSVQISNDTHHHHHHHHHHHHPHGVLNFSGIFGISSDNPGNQSPSTLPFHWE 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23147562 23150337 + MELO3C002370.2.1 Cme12g01579 344796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01579 374 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 51 374 - -
Cme12g01579 374 MobiDBLite consensus disorder prediction 353 374 - -
Cme12g01579 374 MobiDBLite consensus disorder prediction 331 346 - -
Cme12g01579 374 Gene3D - 68 138 IPR036893 GO:0003677|GO:0005634
Cme12g01579 374 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 374 IPR044817 GO:0003677
Cme12g01579 374 MobiDBLite consensus disorder prediction 277 297 - -
Cme12g01579 374 Pfam SBP domain 77 150 IPR004333 GO:0003677
Cme12g01579 374 MobiDBLite consensus disorder prediction 184 208 - -
Cme12g01579 374 MobiDBLite consensus disorder prediction 310 328 - -
Cme12g01579 374 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677
Cme12g01579 374 MobiDBLite consensus disorder prediction 51 70 - -
Cme12g01579 374 MobiDBLite consensus disorder prediction 141 169 - -
Cme12g01579 374 SUPERFAMILY SBT domain 75 156 IPR036893 GO:0003677|GO:0005634
Cme12g01579 374 MobiDBLite consensus disorder prediction 310 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01786 Cme-Chr6:20873962 Cme12g01579 Cme-Chr12:23147562 1.39E-46 dispersed
Cme11g02227 Cme-Chr11:29499556 Cme12g01579 Cme-Chr12:23147562 1.54E-33 dispersed
Cme12g01333 Cme-Chr12:21335535 Cme12g01579 Cme-Chr12:23147562 3.18E-37 dispersed
Cme12g01579 Cme-Chr12:23147562 Cme12g01922 Cme-Chr12:25258035 1.03E-34 dispersed
Cme11g02326 Cme-Chr11:30336669 Cme12g01579 Cme-Chr12:23147562 3.15E-49 wgd
Cme12g01579 Cme-Chr12:23147562 Cme02g02077 Cme-Chr2:26689297 1.21E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42353 PF03110 SBP 7.70E-31 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01579 - - csv:101221267 549.28