Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01579 | TCTCAAAGCTCCTACCCCTTAAGCCTTGACCTTCCATCTCTCTCTAAGTTCTCTTTTCTCTTTCTTCTCTTGAATGCTTTAAACCAGACCAAGAATGACATCTTACTAATAGTTCCAATCTTCTTGGAAGGCCAACATCCAACTCCTTTCAAAGAAATGGCATCATCAACCTCAGGATCATCAAAGAGAGCCAGAGGAACTCATAATGGTAACACTCAACCAGTTTCTTGTCTTGTAGATGGATGCAATTCAGATCTAAGCAACTGTAGAGATTACCATAGACGCCATAAAGTTTGTGAACTCCATTCAAAGACTCCTCAAGTTACAATTGCTGGCTTGAAACAGAGATTTTGCCAGCAGTGTAGTAGGTTTCATTCACTTGAGGAATTTGACGAAGGAAAGAGAAGCTGTCGGAAACGGCTCGATGGCCATAACCGGCGACGGAGGAAGCCTCAGACTGACCTCTTGCCTCGATCTGCTGCCGGTCCTTTCTCCTATCATCAAGGACCCCCGTTGTTGCCATTTACGAGCTCTCAAGTGTTTCCATCAACCACCGTGAGTAGCCACGGGTGGTCGTCCGGAGGCAGCGACAACGCAACGGATCCCGGCGTCCACCACAACCGGAACCCACAACTAAATTTCTTGGAAAAACAGCAGAGCATATTTGTAGAAACATCCGACCAAACCAACAACATCAACAACTACAAAGCCTCGCCCCCGTTAGGGCTTTTGCACGGCGGAGGAGGCGGCAGCGAAAGGAACAAGATGATATACGACAGATTCAGAATTGGGATTAATGAATCAGATTGTGCTCTCTCTCTTCTGTCATCACCACAGACACAGATTCAGAGTGATCATCAGCCACAACAACAACAGCAACAGCAACGTAACGCCGCCATTTCTTTGCTCCATCCATTAAGTACTACCCATCAAAATGCTTTCGACAATTCTTCCGATACTTCTTCTTCTTCTGTTCAGATTTCAAATGACACTCATCACCATCATCACCATCACCATCATCATCATCATCCTCATGGAGTTCTTAATTTCTCCGGGATCTTTGGAATTTCTTCCGACAATCCTGGAAATCAATCCCCTTCTACTCTTCCTTTTCATTGGGAGTAG | 1125 | 45.33 | SQSSYPLSLDLPSLSKFSFLFLLLNALNQTKNDILLIVPIFLEGQHPTPFKEMASSTSGSSKRARGTHNGNTQPVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIAGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQTDLLPRSAAGPFSYHQGPPLLPFTSSQVFPSTTVSSHGWSSGGSDNATDPGVHHNRNPQLNFLEKQQSIFVETSDQTNNINNYKASPPLGLLHGGGGGSERNKMIYDRFRIGINESDCALSLLSSPQTQIQSDHQPQQQQQQQRNAAISLLHPLSTTHQNAFDNSSDTSSSSVQISNDTHHHHHHHHHHHHPHGVLNFSGIFGISSDNPGNQSPSTLPFHWE | 374 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 23147562 | 23150337 | + | MELO3C002370.2.1 | Cme12g01579 | 344796 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01579 | 374 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 | 51 | 374 | - | - | |
Cme12g01579 | 374 | MobiDBLite | consensus disorder prediction | 353 | 374 | - | - | |
Cme12g01579 | 374 | MobiDBLite | consensus disorder prediction | 331 | 346 | - | - | |
Cme12g01579 | 374 | Gene3D | - | 68 | 138 | IPR036893 | GO:0003677|GO:0005634 | |
Cme12g01579 | 374 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 51 | 374 | IPR044817 | GO:0003677 | |
Cme12g01579 | 374 | MobiDBLite | consensus disorder prediction | 277 | 297 | - | - | |
Cme12g01579 | 374 | Pfam | SBP domain | 77 | 150 | IPR004333 | GO:0003677 | |
Cme12g01579 | 374 | MobiDBLite | consensus disorder prediction | 184 | 208 | - | - | |
Cme12g01579 | 374 | MobiDBLite | consensus disorder prediction | 310 | 328 | - | - | |
Cme12g01579 | 374 | ProSiteProfiles | Zinc finger SBP-type profile. | 74 | 151 | IPR004333 | GO:0003677 | |
Cme12g01579 | 374 | MobiDBLite | consensus disorder prediction | 51 | 70 | - | - | |
Cme12g01579 | 374 | MobiDBLite | consensus disorder prediction | 141 | 169 | - | - | |
Cme12g01579 | 374 | SUPERFAMILY | SBT domain | 75 | 156 | IPR036893 | GO:0003677|GO:0005634 | |
Cme12g01579 | 374 | MobiDBLite | consensus disorder prediction | 310 | 374 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g01786 | Cme-Chr6:20873962 | Cme12g01579 | Cme-Chr12:23147562 | 1.39E-46 | dispersed | |
Cme11g02227 | Cme-Chr11:29499556 | Cme12g01579 | Cme-Chr12:23147562 | 1.54E-33 | dispersed | |
Cme12g01333 | Cme-Chr12:21335535 | Cme12g01579 | Cme-Chr12:23147562 | 3.18E-37 | dispersed | |
Cme12g01579 | Cme-Chr12:23147562 | Cme12g01922 | Cme-Chr12:25258035 | 1.03E-34 | dispersed | |
Cme11g02326 | Cme-Chr11:30336669 | Cme12g01579 | Cme-Chr12:23147562 | 3.15E-49 | wgd | |
Cme12g01579 | Cme-Chr12:23147562 | Cme02g02077 | Cme-Chr2:26689297 | 1.21E-82 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42353 | PF03110 | SBP | 7.70E-31 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01579 | - | - | csv:101221267 | 549.28 |