Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01580 ATGGGAAGAGGTAAAGTTGAGCTGAAGAGAATTGAAAATCCGACAAGTCGGCAAGTGACATTCTCGAAGCGTCGGAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCCCAAGTTGCCCTTCTCATCTTTTCCCCTTCCGGCAAAGCCTACCAATTCTCTAGCCATGACATGGATGGAACCCTAGCAAGGTATAGGACTGACGTCGGGCTACCACAATCCAACCATCCACATTCACGAGCTCTGTTTTGGAAGAGTGAGATGGAGGATATGAAAAGATCAATAAGCAGCTTGGAGGCAAGATTAAGACACTTTGTTGGAGAGGATCTCGAACCGTTGAGCGTGAAGGAGTTAAAACAGTTAGAAAGGCAAATGAGCGTAGGAATTGAACGCATTCGCTCTAAAAAGAGACGTTTCCTAGCAGAGCATATTAACCTGTTGAAAAGGAAGTATAAGGGTTTGCAAGAGGAGCACAGCCGTCTTCAGAAAAGATTGAATCAGCTTAAGGATGTGGTTGTCACAACTTCTTCAAGAATCTCAGATGCTAATCCTACCTCTGCACTTGAAATGGAATTTCAGGTGGATGGCTTACTAATTTAA 612 43.46 MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRALFWKSEMEDMKRSISSLEARLRHFVGEDLEPLSVKELKQLERQMSVGIERIRSKKRRFLAEHINLLKRKYKGLQEEHSRLQKRLNQLKDVVVTTSSRISDANPTSALEMEFQVDGLLI 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23153682 23158190 - MELO3C002369.2.1 Cme12g01580 344797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01580 203 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Cme12g01580 203 PANTHER - 1 170 - -
Cme12g01580 203 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme12g01580 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme12g01580 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme12g01580 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme12g01580 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme12g01580 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme12g01580 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme12g01580 203 Coils Coil 122 175 - -
Cme12g01580 203 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Cme12g01580 203 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Cme12g01580 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 170 - -
Cme12g01580 203 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01580 K09264 K09264; MADS-box transcription factor, plant - csv:101222812 381.333
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01580 Cme-Chr12:23153682 Cme03g01461 Cme-Chr3:23893794 2.96E-48 dispersed
Cme12g01580 Cme-Chr12:23153682 Cme12g01581 Cme-Chr12:23157696 1.57E-60 tandem
Cme11g00042 Cme-Chr11:372198 Cme12g01580 Cme-Chr12:23153682 2.62E-11 transposed
Cme11g02324 Cme-Chr11:30303986 Cme12g01580 Cme-Chr12:23153682 5.04E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g95 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme12g01580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010800 0 2 0 0 0 1 2 1 1 1 1 1 2 2 1 2 1 0 1 1 1 1 1 1 1 1 1 2 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42354 PF01486 K-box 7.90E-24 No_clan Cme TF