Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01592 ATGGCTACGGCTCAGCAGATATTGAATAGCCTTAATACGCCTAAGGATGTTCGAGACGATATGCTTTTGATCTTCTCTAGTTTTGATAATCGTCTTTCTAATATCACCAGTTTGGTCAATAGTGGGGATTCGAAGAAAGAGGAGGATCGATTCGAAGCTGCGGAGAAGGTGATTCTTCGTTGGGATTCTGGTCATGGAGCTTCTCGGAACTCGATTAATTGGGAGGACTCGCCAGATGAGGCGGCTGAGTATTTAACTGCGGTTGATGATATTATTCAGTGGATCGACGACTTGTCGATTCGTTCGGATTCTGCTGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCGAGGCTTGAGGATGAGTTTCGTCATATGTTGATTCGGAGCACCGTTCCTCTCGATGCGGACCATCTCTACGGTTCAATTCGTAAGGTTTCCCTCTCTTTTGCTTCACACGACAGCGAAAATTCCGATGAATTTGAGTCGTTTGCTGATGCTCACCGTGGTTCCGGAATCTATCATGAGCGTGGTGTCAGTTTGGGAGATGATTTGCGGGTTGATTTGATCCATCCTGACGCCGTTGTTGATTTGAAGGAGATCGCCGACCGGATGATTCGGTCTGGATACGAGAAAGAGTGTGTTAATGTGTATACTGGTGTTCGTCGCGATGCTTTAGATGAGTGCTTGGTTGTTCTTGGAGTTGAGAAGCTAAGTATTGAGGATGTTCAGAAAATTGACTGGAAAATCTTAGACGAGAAGATGAAGAAATGGATCCAAGCTGTTAAGGTCAGCGTTCGAGTACTTTTGACGGGGGAGAAGCGACTGTGCGACTATATCTTTAGTGGCTCCGATGATTCTGAGGAAGTCTGCTTCAATGAGACTGCCAAAGGGTGCATCAGACAATTACTGAATTTTGCAGAAGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATTCTAGATATGTATGAAGCTCTGGAATACGTTTTCCCAGAATTGCAGGCTATGGTCACTGATGAATTTGTGATCGAGGAGGCGCGAGGAGTACTTTCTAGGCTGGGAGAGGCCGCCAAAGGTACATTTGTTGAATTTGAGAATGCTGTTCGGAGTGAAACTTCTAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTCACTCGTTATGTCATGAATTACTTAACATTGGTTGTGGTTTATAGTAAGACTCTTGATGCACTTTTAGAAGGTGACGATGAGGATTTGCATCACCTAGGGGTTGATGGTGCTGAAAATTTGGAGTTAGAAACTATGTCACCTTTAGGTCGTCGTTTGTTTTCATTGATAGCAACACTGGAGACCAATCTAGAGAGAAAATCCAAACTCTATGGTGATGATTCAATACAATATATATTCCTCATGAACAATATACAATATATTGTGCAAAAAGTGAAAGATTCTGAGCTTGGAAAGCTTTTGGGCGACCGCTGGGTACGGAAGCGCCGAGGCCAGGTTCGCATATATGCAACAAACTATCTTAGGGCGTCTTGGGGCAAATTATTATCTTTTTTGAAGGAAGAAGGTACTGGTGGGAGCTCCAACAGTGCCCTGAAACTAGCTACTTTGAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAAATCTATAGAGTTCAGACAGGTTGGAAGGTTCCAGATGCTCAACTACGAGAAGAGCTCCGAATTTCAGTGTCCGCAAAAGCTCTACCTGCTTATCGTGCCTTCTTGGGAAGACATGGAAGTCAGTTAGAGAATACAAGACATGCTGGGAGGTATATAAAGTACACATCAGATGACTTGGAAGGCTATCTATTGGATTTGTTTGAAGGATCATCTTGTGTTATACATCACTTACGAAGAAAAAGTAGTTCATAG 1914 43.52 MATAQQILNSLNTPKDVRDDMLLIFSSFDNRLSNITSLVNSGDSKKEEDRFEAAEKVILRWDSGHGASRNSINWEDSPDEAAEYLTAVDDIIQWIDDLSIRSDSAEIVDRAENAIQIAMSRLEDEFRHMLIRSTVPLDADHLYGSIRKVSLSFASHDSENSDEFESFADAHRGSGIYHERGVSLGDDLRVDLIHPDAVVDLKEIADRMIRSGYEKECVNVYTGVRRDALDECLVVLGVEKLSIEDVQKIDWKILDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFSGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALEYVFPELQAMVTDEFVIEEARGVLSRLGEAAKGTFVEFENAVRSETSKKTMLNAEIHPLTRYVMNYLTLVVVYSKTLDALLEGDDEDLHHLGVDGAENLELETMSPLGRRLFSLIATLETNLERKSKLYGDDSIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKEEGTGGSSNSALKLATLKEKFKNFNAGFEEIYRVQTGWKVPDAQLREELRISVSAKALPAYRAFLGRHGSQLENTRHAGRYIKYTSDDLEGYLLDLFEGSSCVIHHLRRKSSS 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23218332 23220537 + MELO3C002359.2.1 Cme12g01592 344809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01592 637 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 34 635 - -
Cme12g01592 637 SUPERFAMILY Cullin repeat-like 51 622 IPR016159 -
Cme12g01592 637 Gene3D Exocyst complex component Exo70 65 627 - -
Cme12g01592 637 Pfam Exo70 exocyst complex subunit 259 618 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cme12g01592 637 PANTHER EXOCYST COMPLEX PROTEIN EXO70 34 635 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01592 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101212753 1231.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00990 Cme-Chr2:14729508 Cme12g01592 Cme-Chr12:23218332 0 dispersed
Cme04g01362 Cme-Chr4:19219097 Cme12g01592 Cme-Chr12:23218332 2.75E-154 dispersed
Cme10g00165 Cme-Chr10:1139854 Cme12g01592 Cme-Chr12:23218332 8.12E-114 dispersed
Cme11g01259 Cme-Chr11:19404241 Cme12g01592 Cme-Chr12:23218332 2.98E-104 dispersed
Cme12g00048 Cme-Chr12:469752 Cme12g01592 Cme-Chr12:23218332 4.93E-125 dispersed
Cme12g01592 Cme-Chr12:23218332 Cme12g01942 Cme-Chr12:25362669 5.81E-129 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00165 . 14 651 EXO70 exocyst subunit family AT5G03540 77.1 5.7e-287 983.4
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G03540 70.6 1.5e-263 905.6
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G52340 79.7 1.3e-296 1015.4
Cme10g00165 . 16 651 EXO70 exocyst subunit family AT5G52340 74.2 9.3e-271 929.5
Cme08g01155 . 202 689 EXO70 exocyst subunit family AT5G52350 63.2 5.8e-174 607.8
Cme10g00165 . 151 651 EXO70 exocyst subunit family AT5G52350 60.6 1.2e-168 590.1
Cme12g00048 . 46 668 EXO70 exocyst subunit family AT5G58430 67.4 1.2e-246 849.4
Cme12g00048 . 46 667 EXO70 exocyst subunit family AT1G07000 53.0 2.2e-176 615.9
Cme07g01926 . 62 675 EXO70 exocyst subunit family AT5G13150 53.9 1.0e-171 600.5
Cme09g01028 . 99 710 EXO70 exocyst subunit family AT5G13990 54.2 5.2e-190 661.4
Cme04g01362 . 9 609 EXO70 exocyst subunit family AT1G72470 64.4 4.3e-215 744.6
Cme04g01362 . 9 607 EXO70 exocyst subunit family AT1G54090 62.2 2.2e-208 722.2
Cme04g01362 . 9 608 EXO70 exocyst subunit family AT3G14090 64.7 9.6e-220 760.0
Cme02g00990 . 13 651 EXO70 exocyst subunit family AT5G50380 62.6 3.3e-229 791.6
Cme12g01592 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 8.3e-225 776.9
Cme03g01702 . 13 682 EXO70 exocyst subunit family AT4G31540 73.2 4.2e-293 1003.8
Cme11g01259 . 33 598 EXO70 exocyst subunit family AT3G55150 50.3 3.1e-149 525.8
Cme04g02590 . 27 632 EXO70 exocyst subunit family AT3G09520 54.4 1.4e-178 623.2
Cme11g01259 . 16 598 EXO70 exocyst subunit family AT5G59730 50.8 1.4e-154 543.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74