Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01596 ATGGCAGTCTCATTGAGCGATGTCAAATCGGCAGCTGGTCTCAAAAAGCTCGACGAGTACCTGCTCAGTCGCAGTTACATTTCTGGGTATCAAGCTTCGAAAGACGATATCGCTGTTTACGAAGCTCTCTCCAAGCCCGTTTCCAGCGAATATGTTAACGTATCTAGATGGTTTAATCATATCGAAGCACTCGTGAGAGCCTCTGCTAGTTTTGGAGAGGGTTCTGGCGTTAAGTTCGATTCAGAAGCAATCGCCACCCCACCGGCTGCCGATGCTAAGGCTAGTGCTGATGACGACGATGATGACGACGATATGGATCTGTTTGGCGAAGAGACTGAAGAGGAAAAGAAGGCTGCTGAGGAGCGTGCAGCTGCCGTCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGAAAATCATCAGTTTTGATGGACATCAAGCCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAAGCCGTAAGAGGCGTTCATATGGAGGGATTGCTTTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATTAAGAAACTACAGATAATGCTCACAATTGTTGATGACCTTGTGTCGGTTGACAACCTCATTGAGGAACACTTGACAGTTGAACCCATCAACGAGCATGTTCAGAGTTGCGATATTGTTGCCTTCAACAAAATCTAA 681 46.55 MAVSLSDVKSAAGLKKLDEYLLSRSYISGYQASKDDIAVYEALSKPVSSEYVNVSRWFNHIEALVRASASFGEGSGVKFDSEAIATPPAADAKASADDDDDDDDMDLFGEETEEEKKAAEERAAAVKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRGVHMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLTVEPINEHVQSCDIVAFNKI 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23248218 23250512 + MELO3C002355.2.1 Cme12g01596 344813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01596 226 Gene3D - 130 226 IPR014717 -
Cme12g01596 226 SUPERFAMILY GST C-terminal domain-like 10 65 IPR036282 -
Cme12g01596 226 SMART EF1_GNE_2 137 226 IPR014038 GO:0003746|GO:0006414
Cme12g01596 226 SUPERFAMILY eEF-1beta-like 134 226 IPR036219 -
Cme12g01596 226 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 101 109 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cme12g01596 226 MobiDBLite consensus disorder prediction 111 130 - -
Cme12g01596 226 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 215 226 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cme12g01596 226 MobiDBLite consensus disorder prediction 88 130 - -
Cme12g01596 226 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 226 - -
Cme12g01596 226 Pfam EF-1 guanine nucleotide exchange domain 139 226 IPR014038 GO:0003746|GO:0006414
Cme12g01596 226 CDD EF1B 135 226 IPR014038 GO:0003746|GO:0006414
Cme12g01596 226 Gene3D - 2 73 - -
Cme12g01596 226 MobiDBLite consensus disorder prediction 95 110 - -
Cme12g01596 226 Coils Coil 109 129 - -
Cme12g01596 226 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 1 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00995 Cme-Chr3:18874213 Cme12g01596 Cme-Chr12:23248218 7.03E-111 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01596 K03232 - csv:101215489 359.762