Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01602 GGTAACTTGTTAAGTTGGATCCCACTGAGGGATTTAAGTTTTGAGAAGATTTTAGGTCCACCCGGATCAGGTAAGGGGACCCAATCACCAATCATCAAGGACGATTACTGCTTGTGCCACTTGGCTACTGGTGATATGTTAAGAGCGGCTGTTGCTGCTAAAACTCCTCTTGGTGTCAAGGCTAAAGAGGCTATGGACAAGGGTGAACTTGTTTCTGATGACTTGGTTGTTGGCATCATTGATGAAGCAATGAAGAAACCTTCATGTCAGAAAGGCTTCATTCTGGATGGATTTCCAAGAACTGTAGTTCAAGCGCAGAAGCTTGATGAGGTGCTTGAAAAGCAAGGAGTGAGAGTTGATAAGGTACTCAACTTTGCTATTGATGATGCAATTTTGGAGGAGAGAATCACTGGAAGATGGATTCACCCATCTAGTGGGAGAAGTTACCACACAAAATTTGCTCCTCCAAAGACTCCTGGTGTGGACGATATAACTGGAGAACCTTTGATTCAACGCAAAGATGATACTGCCGCTGTATTGAAGTCACGCCTGGAGGCATTTCACAAACAAACCGAGCCGGTGATTGATTATTATGCCAAAAAGGGTATTGTTGCTAATCTTCACGCGGAGAAGCCTCCAAAAGAAGTCACAGCTGAGGTTCAGAAAGTTCTCTCATCATAG 681 44.05 GNLLSWIPLRDLSFEKILGPPGSGKGTQSPIIKDDYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEVLEKQGVRVDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGVDDITGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGIVANLHAEKPPKEVTAEVQKVLSS 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23290838 23292883 + MELO3C002349.2.1 Cme12g01602 344819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01602 226 Pfam Adenylate kinase, active site lid 139 174 IPR007862 GO:0004017
Cme12g01602 226 Hamap Adenylate kinase [adk]. 17 225 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cme12g01602 226 ProSitePatterns Adenylate kinase signature. 93 104 IPR033690 -
Cme12g01602 226 CDD ADK 17 216 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cme12g01602 226 TIGRFAM adk: adenylate kinase 17 224 IPR006259 GO:0004017|GO:0005524|GO:0016776
Cme12g01602 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 224 IPR027417 -
Cme12g01602 226 PANTHER NUCLEOTIDE KINASE 17 225 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cme12g01602 226 Pfam Adenylate kinase 17 202 - -
Cme12g01602 226 Gene3D - 16 226 IPR027417 -
Cme12g01602 226 PANTHER ADENYLATE KINASE 3 17 225 - -
Cme12g01602 226 PRINTS Adenylate kinase signature 44 58 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cme12g01602 226 PRINTS Adenylate kinase signature 172 187 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cme12g01602 226 PRINTS Adenylate kinase signature 93 109 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cme12g01602 226 PRINTS Adenylate kinase signature 189 203 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cme12g01602 226 PRINTS Adenylate kinase signature 16 29 IPR000850 GO:0005524|GO:0006139|GO:0019205
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01602 K00939 adk, AK; adenylate kinase [EC:2.7.4.3] - csv:101214286 412.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01860 Cme-Chr5:27373337 Cme12g01602 Cme-Chr12:23290838 9.75E-37 dispersed
Cme06g00328 Cme-Chr6:2030485 Cme12g01602 Cme-Chr12:23290838 3.01E-19 dispersed
Cme08g02345 Cme-Chr8:30418893 Cme12g01602 Cme-Chr12:23290838 6.93E-33 dispersed
Cme10g00826 Cme-Chr10:5455984 Cme12g01602 Cme-Chr12:23290838 2.07E-27 dispersed
Cme11g02472 Cme-Chr11:31374432 Cme12g01602 Cme-Chr12:23290838 7.16E-22 dispersed
Cme03g01102 Cme-Chr3:20440202 Cme12g01602 Cme-Chr12:23290838 5.62E-39 transposed
Cme12g01602 Cme-Chr12:23290838 Cme02g02044 Cme-Chr2:26491923 1.99E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g143 . . Bda06g00737 . . . . Bma12g01075 . Cmo18g00202 . . Car10g00061 . . . . Bhi02g00537 . . . Hepe09g0061 . . . . . . . . . Cone2ag0964 Cone16ag0028 . Cone19ag0199 Lsi02g00488 Csa01g00950 Chy12g01181 Cme12g01602 . Blo15g00217 Bda11g01817 . Bpe07g00882 . . . . . . . . . Car18g00219 Cpe09g00971 . Bhi08g01461 . . . . . . Cla03g00344 Cam03g0360 . Cco03g0365 Clacu03g0361 Cmu03g0966 Cre03g0659 . Csa01g00069 Chy02g02651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003681 2 2 1 2 2 1 2 0 0 2 1 1 1 2 2 2 1 2 2 1 2 2 2 2 2 0 2 2 1 2 46