Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01605 ATGTGTTTATGCATAATCCTTGTATTGCACGGATTTCCTCTACGTCGTGGCTATAAAATTTTGCGTACTTGGACTTTCTTCAGCCACGAAATTCATTCATATTTTTTCTTCGGAAATCAGAATTTCGCTTTAATGGCTACCCATTCTGTTGATTCTCGGAGCGGTTTCTGTTCTCAAACCAAGATTTACAAGAGTCTCCGACCACCGTTATCGCTTCCGCCGTTATCTCAGCCACTTACCGTTGCTGGGCATGCGCTTTCTGTTCTCCGATCATCTCCTCCTCCGCCCAACACTGCTGCTCTCATCGACTCCGACTCTGGCGTCAGTGTCTCTTACGCTCTTTTCCTCCGTCAAATTCGAAACCTCACCTCTAACCTTAAAGCTCTTTATTCCTTCTCTAATGGTCAAGTGGCGTTTATTCTTTCACCCACTTCTCTGCAAATCCCTGTGTTGTATTTCGCTTTATTATCTCTTGGTGTTGTTGTCTCTCCGGCTAATCCTATCAGTTCCGAATCGGAGATTGCTCACCAGGTTAGTCTCTGTAAACCGGTCATTGCATTCGCTATTTCCTCAACGGCGTCTAAGATCCCGAGGCTTCCACTTGGCACTGTATTGATAGATTCGCCGGAGTTTCTTTCTTTGATGAATGAAAGTAATCGATCGGAGGGAGTGAACGATGGAATTTTCGATCTCAAAATCAATCAAAACGATTCTGCGGCGATTTTGTATTCTTCAGGGACTACCGGGCGAGTGAAAGGCGTTTTACTCTCTCACCGGAACCTCATAACGGCGATCACTGGGGTTCAAGTATTAGATAAAACGCCCGTCGATGGAGAGATTGAGCCACATCCCGTTGCTCTTAGTCTGTTACCTCTGTTTCATGTTTTCGGGTTCTTTATGTTGTTTCGATCGATTTCAGAGGGCAATACATTGGTTTTGATGCGTAAGTTCGATTTCGAAAAGATGTTAAGAGCTGTGGAGAAGTATAGGGTTACATACATTCCGGTCTCTCCGCCGCTGGTTTTGGCCATGGCCAAATCGGAGCTAGCAGAGAAGTATGATCTCAGTTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTTGGTAAAGAAGTCATCGATAAATTCCATGTAAAGTTCCCCAACGTAGAAATTATTCAGGGATATGGGTTGACAGAGAGTGCAGGAGCAGCATCAAGAACTGTCGGGCCTGAAGAATGCAGTAAAGCAAGTTCCGTCGGTCGCCTATCGGAAAATATGGAAGCCAAAATAGTTGATCCTTCATCTGGAGAAGCTTTACCTCCTGGCCACAAAGGAGAGCTTTGGATACGAGGTCCAGGAATCATGAAAGGTTATGTCGGAGATGAAAGGGCAACTGCTGAAACCTTGCATCCTGAGGGATGGCTAAAGACTGGTGACCTCTGTTACTTTGATTCTGATGGATTTCTCTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCAATCCCACCCCGAAATCCTTGACGCTGCTGTCATTCCCTATCCTGATGAAGAAGCAGGACAAATTCCTGTAGCTTATGTGGTTAGACAACCCGGAAGCAATATCAACGAGACTCAAGTCATGGATTTTATTGCAAAACAGGTTGCACCGTACAAAAAAATCCGACGAGTGTTTTTTGTGAACGCTGTCCCGAAGTCGCCTGCAGGGAAGATTCTTAGGAGGGAGCTTGTTCAACATGCTCTCTCTCAAGGCTCTAGCAGGCTATAA 1794 45.15 MCLCIILVLHGFPLRRGYKILRTWTFFSHEIHSYFFFGNQNFALMATHSVDSRSGFCSQTKIYKSLRPPLSLPPLSQPLTVAGHALSVLRSSPPPPNTAALIDSDSGVSVSYALFLRQIRNLTSNLKALYSFSNGQVAFILSPTSLQIPVLYFALLSLGVVVSPANPISSESEIAHQVSLCKPVIAFAISSTASKIPRLPLGTVLIDSPEFLSLMNESNRSEGVNDGIFDLKINQNDSAAILYSSGTTGRVKGVLLSHRNLITAITGVQVLDKTPVDGEIEPHPVALSLLPLFHVFGFFMLFRSISEGNTLVLMRKFDFEKMLRAVEKYRVTYIPVSPPLVLAMAKSELAEKYDLSSLQILGCGGAPLGKEVIDKFHVKFPNVEIIQGYGLTESAGAASRTVGPEECSKASSVGRLSENMEAKIVDPSSGEALPPGHKGELWIRGPGIMKGYVGDERATAETLHPEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSHPEILDAAVIPYPDEEAGQIPVAYVVRQPGSNINETQVMDFIAKQVAPYKKIRRVFFVNAVPKSPAGKILRRELVQHALSQGSSRL 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23303176 23306408 + MELO3C035535.2.1 Cme12g01605 344822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01605 597 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 70 587 - -
Cme12g01605 597 ProSitePatterns Putative AMP-binding domain signature. 241 252 IPR020845 -
Cme12g01605 597 Gene3D - 75 490 IPR042099 -
Cme12g01605 597 SUPERFAMILY Acetyl-CoA synthetase-like 95 592 - -
Cme12g01605 597 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 70 587 - -
Cme12g01605 597 Gene3D - 491 592 IPR045851 -
Cme12g01605 597 CDD 4CL 86 585 - -
Cme12g01605 597 Pfam AMP-binding enzyme C-terminal domain 504 579 IPR025110 -
Cme12g01605 597 Pfam AMP-binding enzyme 95 495 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00108 Cme-Chr5:683509 Cme12g01605 Cme-Chr12:23303176 2.22E-21 dispersed
Cme07g00071 Cme-Chr7:444827 Cme12g01605 Cme-Chr12:23303176 5.33E-159 dispersed
Cme10g00113 Cme-Chr10:788039 Cme12g01605 Cme-Chr12:23303176 1.19E-122 dispersed
Cme12g00392 Cme-Chr12:5642969 Cme12g01605 Cme-Chr12:23303176 4.13E-139 dispersed
Cme12g01605 Cme-Chr12:23303176 Cme02g01554 Cme-Chr2:22576638 2.32E-114 dispersed
Cme12g01605 Cme-Chr12:23303176 Cme12g01607 Cme-Chr12:23307847 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01605 K01904 - csv:101211791 1015.76