Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01607 ATGGCAGCTCGGAACTCTAACTTCAACGCCGCCCCCCATTCCATTGATCTTCGAAGCGGTTTCTGTCCTCTGACGAAGATTTTCCACAGCCTTCGACCACCGCTCTCACTTCCACCATTATCTCAGCCTCTCTCCGTCACCCAACACGCCTTTTCTCTCCTTCAATCATCTTCTCCCCCTCCAAATTCCACCCTTCTCATCGATTCCAATTCCGGCCTCCATTTGTCCTACGCCATTTTCCTCCGTCAAATTCGAAACCTTGCCTCAAATCTCAAATCTTTAACCTCCCTATGCAATGGCCATGTCGCGTTTATCCTCGCACCCACTTCTCTCCAAATCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGCGTCGTTCTCTCTCCGGCTAATCCAACCAGTTCCGTTTCAGAAATTTCTCATCAGATTCAACTCAGTAAACCGGTCATTGCCTTCGCTACATCCTCAACCGCCTCCAAGCTCCCTACGCTTCGATTCGGCACCGTTATCATCGATTCGCCTCATTTCCTCTCTATGTTGACCGAAACCAACGGATCCGATGGTCTCACCGACATCAAAATCGATCAATCCGACTCGGCGGCGATTCTTTACTCATCAGGTACTACAGGACGAGTGAAAGGCGTGCTACTGAGTCATCGGAACCTTATCGCGGTGAACTCAGGGCCAACTGCTTTTCAATCGGAGATCCACGAAGGAGAAATGAAACCGCATCCGGTTGCTCTGTGTTTGTTGCCTTTATTTCATGTTTTCGGATTCGTAATGTTGGTTCGAGCGATTTCACGAGGAGAAACGTTGGTTTTAATGGAGAGATTCGAATTCGAAGGGATGCTAAGAGCAGTGGAGAAGTTCAGGGTTATCTACATTCCAGTTTCGCCGCCGCTGGTGGTGGCGATGGCGAAATCAGATCTGGTGGCGAAATATGATCTGAGTTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCGCTTGGGAAAGAAGTGATCGATAAATTCCATCAGAAATTGCCCAGCGTTGAAATTGCCCAGGGATACGGCTTGACGGAGAGTACAGCAGGTGCAGCGAGAACTATGGAGCCCGAGGAAATTAGCAACACGAAATCAGTAGGTCGCTTATCTGGAAGTATGGAAGCCAAGATAGTGGATCCTGCATCTGGAGAAGCCTTACTTCCTAACCACAAAGGAGAGCTTTGGCTGCGAGGTCCAACGATCATGAAGGGTTACGTTGGAGATGACAAGGCAACTACTGAAACCTTGGATCCAGATGGATGGCTAAAAACTGGCGATCTTTGCTATTTTGATTCAGATGGATTCCTCTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCAGCAGAATTGGAACATTTGCTTCAATCCAACCCCGAAATCATTGACGCTGCCGTGATACCCTATCCTGATGAAGAAGCTGGAGAGATTCCTATGGCTTATGTTGTTAGAAAGCCCGGAAGTAATATCTCTGAGGCTCAAGTTGCGCCGTACAAGAAAATTCGACGAGTCTCTTTTATCGACGCAATCCCTAAATCGCCTGCAGGTAAGATTCTG 1602 47.88 MAARNSNFNAAPHSIDLRSGFCPLTKIFHSLRPPLSLPPLSQPLSVTQHAFSLLQSSSPPPNSTLLIDSNSGLHLSYAIFLRQIRNLASNLKSLTSLCNGHVAFILAPTSLQIPVLYFALLSLGVVLSPANPTSSVSEISHQIQLSKPVIAFATSSTASKLPTLRFGTVIIDSPHFLSMLTETNGSDGLTDIKIDQSDSAAILYSSGTTGRVKGVLLSHRNLIAVNSGPTAFQSEIHEGEMKPHPVALCLLPLFHVFGFVMLVRAISRGETLVLMERFEFEGMLRAVEKFRVIYIPVSPPLVVAMAKSDLVAKYDLSSLQILGCGGAPLGKEVIDKFHQKLPSVEIAQGYGLTESTAGAARTMEPEEISNTKSVGRLSGSMEAKIVDPASGEALLPNHKGELWLRGPTIMKGYVGDDKATTETLDPDGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEEAGEIPMAYVVRKPGSNISEAQVAPYKKIRRVSFIDAIPKSPAGKIL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23307847 23310893 + MELO3C002346.2.1 Cme12g01607 344824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01607 534 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 30 534 - -
Cme12g01607 534 Gene3D - 35 451 IPR042099 -
Cme12g01607 534 SUPERFAMILY Acetyl-CoA synthetase-like 60 534 - -
Cme12g01607 534 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Cme12g01607 534 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 534 - -
Cme12g01607 534 Gene3D - 452 534 IPR045851 -
Cme12g01607 534 Pfam AMP-binding enzyme 60 456 IPR000873 -
Cme12g01607 534 CDD 4CL 49 534 - -
Cme12g01607 534 Pfam AMP-binding enzyme C-terminal domain 465 532 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01607 Cme-Chr12:23307847 Cme12g00392 Cme-Chr12:5642969 4.05E-130 dispersed
Cme12g01605 Cme-Chr12:23303176 Cme12g01607 Cme-Chr12:23307847 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01607 K01904 - csv:101213796 943.725