Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01626 ATGGAACCTTCTGAAGCTGTTTCTGTCCCTAATCACTGTGAAGCACCGCCTTCTGGGTTTCAATCTTCACAGCTTCATAGTTCTGTTCATGATCCTCCACCATTTGATGCACAGCATGTAACCACGGATGATCGCATCCATGCAGAACTTCAGAAATTGGATTTGAAGGATGAGAAAGAGGAACCCGTGAAAGATTTTGATGATGGTGGAGAATGGGAAGTTGAGAAGAATCCTTACGAAGATGAAGGAAATGATACGAAGAAGATCGATGAAAATGATCGAGATAGAAGCGTTAGAAATGATGATGATGATGGTTATGATGATGTCGATGAGGAGGTTGATGCCGGCGACGGCGACGGCGACGGCGGTGAGGTGGAAAGGAAAGGGGATTGGAGAGGCAAAAGCAATCAGTACCCAGTACGGCCTGAGGCTGAGGATTGTGCGTTTTACCTTAAGACCGGGACTTGCAAGTTCGGGTCATTTTGCAAATTCAATCACCCTGTTCGAAAGAAAAACCAGGTTGTTTCTGAGAAATTGAAATATGATGATGATTCAGCTGGGACAGCAAACAAAACAGAATGCAAGTTTTACTTGAGGACTGGGGGTTGTAAATTTGGAAATGCTTGTAGATATAACCACACGAGATCAAGAGCGTTAACAAGCCCAATTCTAGAGCTTAACTTCCTTGGTCTGCCAATCCGACCAGATGAAAAAGAATGTCCCTATTACATGCGCACAGGATCCTGCAAATATGGAGCTAACTGCAAGTTTAATCATCCTGATCCTACAACTGTTGCTGGATCTGAATCTCTTTCAGGATATAACAATGGAGTTCCCCTACAAGGTGCATCACAATCACAGATCACATCATGGACTTCACCAAGAGTACTTAATGAAGCCACAACATTTGTACCTGCTATGATTTCACCATCTCAAGATTCAGAATGGAATGGGTACCAGGCTCCCATATATCCATCAGAAATCAGCGTGCTTCCACCTCCACCATATGTCGTGAACAATATAGCACCTGAGGCGGATCTCTATTCTTCTCATCAACAGGTAGACGAATATCCTGAACGACCTGGTCAACCCGAATGCAGTTACTTTCTAAAGACGGGGGATTGTAAATTTAAATCTCTTTGCAAATATCACCATCCGAAGAATCGGAACCCTAAGTTACCGACTTGCACTCTCAATGATAAAGGCCTGCCCTTGAGACCTGATCAGAACGTGTGCACATATTATAGTCGCTATGGCATCTGCAAATTCGGGCCATCGTGCAAGTTTGACCATCCTTTTCTTCCAACTTCTTCAACTGTGGGCGAGCTTGAACAGCAACCTCACTACGGCAACTTCAGCGCTGCAGAAGGGGCTGAAATGGCCGGAGGAGCGAGCGGAAACAGTGCCACAGTCGAGCAGTCTGCATAA 1428 44.96 MEPSEAVSVPNHCEAPPSGFQSSQLHSSVHDPPPFDAQHVTTDDRIHAELQKLDLKDEKEEPVKDFDDGGEWEVEKNPYEDEGNDTKKIDENDRDRSVRNDDDDGYDDVDEEVDAGDGDGDGGEVERKGDWRGKSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQVVSEKLKYDDDSAGTANKTECKFYLRTGGCKFGNACRYNHTRSRALTSPILELNFLGLPIRPDEKECPYYMRTGSCKYGANCKFNHPDPTTVAGSESLSGYNNGVPLQGASQSQITSWTSPRVLNEATTFVPAMISPSQDSEWNGYQAPIYPSEISVLPPPPYVVNNIAPEADLYSSHQQVDEYPERPGQPECSYFLKTGDCKFKSLCKYHHPKNRNPKLPTCTLNDKGLPLRPDQNVCTYYSRYGICKFGPSCKFDHPFLPTSSTVGELEQQPHYGNFSAAEGAEMAGGASGNSATVEQSA 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23421827 23426479 - MELO3C002328.2.1 Cme12g01626 344843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01626 475 MobiDBLite consensus disorder prediction 37 103 - -
Cme12g01626 475 SUPERFAMILY CCCH zinc finger 191 216 IPR036855 GO:0046872
Cme12g01626 475 MobiDBLite consensus disorder prediction 120 134 - -
Cme12g01626 475 Gene3D - 126 183 - -
Cme12g01626 475 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 13 474 - -
Cme12g01626 475 ProSiteProfiles Zinc finger C3H1-type profile. 234 262 IPR000571 GO:0046872
Cme12g01626 475 ProSiteProfiles Zinc finger C3H1-type profile. 406 434 IPR000571 GO:0046872
Cme12g01626 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 167 IPR000571 GO:0046872
Cme12g01626 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 409 433 IPR000571 GO:0046872
Cme12g01626 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 236 260 IPR000571 GO:0046872
Cme12g01626 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 362 387 IPR000571 GO:0046872
Cme12g01626 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 213 IPR000571 GO:0046872
Cme12g01626 475 MobiDBLite consensus disorder prediction 1 137 - -
Cme12g01626 475 MobiDBLite consensus disorder prediction 104 119 - -
Cme12g01626 475 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Cme12g01626 475 MobiDBLite consensus disorder prediction 15 29 - -
Cme12g01626 475 SUPERFAMILY CCCH zinc finger 141 170 IPR036855 GO:0046872
Cme12g01626 475 Gene3D - 405 458 - -
Cme12g01626 475 Gene3D - 349 402 - -
Cme12g01626 475 Gene3D - 184 271 - -
Cme12g01626 475 SUPERFAMILY CCCH zinc finger 404 432 IPR036855 GO:0046872
Cme12g01626 475 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Cme12g01626 475 SMART c3hfinal6 406 433 IPR000571 GO:0046872
Cme12g01626 475 SMART c3hfinal6 360 387 IPR000571 GO:0046872
Cme12g01626 475 SMART c3hfinal6 236 261 IPR000571 GO:0046872
Cme12g01626 475 SMART c3hfinal6 189 215 IPR000571 GO:0046872
Cme12g01626 475 PANTHER PROTEIN PHOSPHATASE RELATED 13 474 - -
Cme12g01626 475 ProSiteProfiles Zinc finger C3H1-type profile. 188 216 IPR000571 GO:0046872
Cme12g01626 475 SUPERFAMILY CCCH zinc finger 235 261 IPR036855 GO:0046872
Cme12g01626 475 ProSiteProfiles Zinc finger C3H1-type profile. 360 388 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01626 - - - cmo:103484086 932.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01510 Cme-Chr11:22300788 Cme12g01626 Cme-Chr12:23421827 6.59E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42357 PF00642 zf-CCCH 1.30E-08 CL0537 Cme TF