Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01627 ATGGCAGGCACAGCCATGGCCGCGGAGCCGACTCAAGAGGTACTTTCTTGGCTCAAAACCCTACCGTTAGCTCCTGAATATCACCCGACTTTAGCAGAGTTTCAAGATCCAATTTCATATATTTTCAAGATCGAAAAAGAGGCTTCTAAGTTTGGAATCTGTAAAATTGTACCCCCTGTTCCTCCTTCACCGAAGAAAACTGTAATTGTCAATTTCAATAAGTCGCTTGCAGCTCGTGCTGCCCCCTGTTCTGACTCGACTAATTCTAAGTCTCCGCCTACATTCACTACTCGACAACAGCAGATCGGGTTTTGTCCGAGGAAAACACGACCGGTTCAGAAATCAGTGTGGCAGAGTGGTGAGTATTATACATTTCAGCAATTTGAGGCTAAGGCGAAGAACTTTGAGAAAAGTTATTTGAAGAAATGTACGAGGAAAGGAGGGCTTTCGCCTTTGGAAATCGAAACGCTCTATTGGAGGGCAACTTTAGACAAGCCCTTTTCCGTGGAATATGCAAACGATATGCCTGGTTCAGCTTTTGTGCCAGTAAGTGCTAAAATGTTTAGGGAGGCAGGGGAAGGAACAACGCTTGGGGAAACGGCGTGGAACATGAGGGGTGTGTCTAGGGCGAAAGGGTCTCTGTTGAAGTTTATGAAGGAAGAGATTCCTGGAGTTACTTCGCCAATGGTGTATGTTGCCATGATGTTCAGTTGGTTTGCTTGGCATGTGGAAGACCATGACTTGCATAGTTTGAATTATCTGCATATGGGGGCGGGAAAGACATGGTATGGGGTACCTAGAGATGCTGCTGTGGCTTTTGAGGAGGTTGTAAGGGTTCAGGGATACGGAGGAGAAATTAATCCACTTGTAACTTTTGCTGTTCTTGGTGAGAAGACTACTGTGATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGTTAGTACAAAATGCAGGTGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGATTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCGGAATGGTTAAACGTTGCTAAAGATGCTGCAATTCGTAGAGCTTCAATCAATTATCCTCCAATGGTCTCTCATTATCAGTTGCTATATGATCTTGCTTTAAGTTCCAGAGCTCCTCTGTGCTCTGGTGCGGAACCAAGAAGTTCACGACTAAAAGATAAAAGGAGGAGTGAAGGAGACACAGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACAGCCTGCTGGATAATCTTGGGGGAGGAGCTTCAGTTGTACTTCTTCCCCCAGGTTCTTTAGAATCTATTTATTCGAGACTGCGTGTTGGATCCCACTTGAGGTCAAAACCTAGATTTCCTACTGGTGTTTGCAGTTCTAAGGAAGAAACCAAATCTCCTCAAAGTTTTGATTATGATAATCTCGCACTAGAAAATAGCCCGGGAATTAATCGAGTGAAAGGTTTCTATTCGGCGAATGGGCCATATTCGACTCTATCTGAAAGAAGCACGGACAATTTATGTGCTTCAAGTTCAAGGCCTTTGAATGCCAACAATGAACGAGGTGGTAATGTTCAAAGCAATGGATTATCAGATCAAAGACTGTTTTCTTGTGTCACATGTGGTATTTTAAGTTTTGCCTGTGTAGCCATCATCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTCAATGATTGGGTTGTTGGTTCCGGGATAGCCAGTGAAGGGATTTCTACTAAAGATCGGCATCCAGTTAGCTCTCAGCAGATTAGTAATAGTGGAAAAAGAGATAAGTGTGTCTCTGATGGATTGTATGACATCCCAGTCCTGGCTGTCAATCGACAGCTTCAGTTAGCAGGCAAAAGTTATGAAGCAGATTTAAATACTGAAAAACGAAATGAGACTTCTGCCCTTGGCATGCTTGCATTGACTTACGGACATTCTTCTGATTCTGAGGACGACAATGCTGAAGCAGATGCTGTTTTAAATGTGGATGATGCTAAACTAATGATTTGTTCTTCAGAAGAACAATATCAGTTTGAAAATTCTGGCCTTACTTCTAGTGAATATAGCAAGAACACTGCAATTTTGAATCACGACCCCTCGTCATTTGGTGTTAACTCTGCAGATCATATGCAATTTCAAGTCAACGACTATGAAGAATTTCGACGAGCTGATTCCAAAGACTCGTTCAATTGTTCTTCTGAGTCTGAAATGGATGGCATAGGTTCAACCAAGAAAAATGGTTTGTCAACTAGATATCAAGATTCTCATGTGAATGGCAGATCTTCCTTAGACGCTGATACTGAAAAACCAGTGTTTGACAAGTCCACTGAAACAGTCGAGACTGAGAATATGCCATTTGCTCCAGATATCGATGAAGACTCCTCTAGATTGCATTTGAACAGTCACCAAGTTGTACTTGTCTTGGGGCCATCTAGAGTTAAGACACAATTGTTTCTTCTGACTATTATGCCAAACTTGAAAATTTTGCTGCATCTAACATTGCCTGCTTCATGA 2562 42.43 MAGTAMAAEPTQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVPPSPKKTVIVNFNKSLAARAAPCSDSTNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKNFEKSYLKKCTRKGGLSPLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAKMFREAGEGTTLGETAWNMRGVSRAKGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFNCGEAANIATPEWLNVAKDAAIRRASINYPPMVSHYQLLYDLALSSRAPLCSGAEPRSSRLKDKRRSEGDTVIKELFVQNIVENNSLLDNLGGGASVVLLPPGSLESIYSRLRVGSHLRSKPRFPTGVCSSKEETKSPQSFDYDNLALENSPGINRVKGFYSANGPYSTLSERSTDNLCASSSRPLNANNERGGNVQSNGLSDQRLFSCVTCGILSFACVAIIQPREQAARYLMSADCSFFNDWVVGSGIASEGISTKDRHPVSSQQISNSGKRDKCVSDGLYDIPVLAVNRQLQLAGKSYEADLNTEKRNETSALGMLALTYGHSSDSEDDNAEADAVLNVDDAKLMICSSEEQYQFENSGLTSSEYSKNTAILNHDPSSFGVNSADHMQFQVNDYEEFRRADSKDSFNCSSESEMDGIGSTKKNGLSTRYQDSHVNGRSSLDADTEKPVFDKSTETVETENMPFAPDIDEDSSRLHLNSHQVVLVLGPSRVKTQLFLLTIMPNLKILLHLTLPAS 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23427548 23435122 - MELO3C002327.2.1 Cme12g01627 344844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01627 853 Pfam jmjN domain 25 58 IPR003349 -
Cme12g01627 853 ProSiteProfiles JmjC domain profile. 199 361 IPR003347 -
Cme12g01627 853 Pfam JmjC domain, hydroxylase 229 346 IPR003347 -
Cme12g01627 853 SUPERFAMILY Clavaminate synthase-like 210 372 - -
Cme12g01627 853 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 605 - -
Cme12g01627 853 MobiDBLite consensus disorder prediction 744 767 - -
Cme12g01627 853 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Cme12g01627 853 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 7 605 - -
Cme12g01627 853 SMART cupin_9 196 361 IPR003347 -
Cme12g01627 853 MobiDBLite consensus disorder prediction 748 767 - -
Cme12g01627 853 Gene3D Cupin 17 365 - -
Cme12g01627 853 SMART JmjN_1 23 64 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01627 - - - csv:101210063 1593.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01261 Cme-Chr3:22233737 Cme12g01627 Cme-Chr12:23427548 6.27E-39 dispersed
Cme04g00144 Cme-Chr4:1071317 Cme12g01627 Cme-Chr12:23427548 2.81E-55 dispersed
Cme12g01007 Cme-Chr12:17605207 Cme12g01627 Cme-Chr12:23427548 7.66E-49 dispersed
Cme12g01627 Cme-Chr12:23427548 Cme06g02447 Cme-Chr6:31516896 2.86E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42358 PF02373 JmjC 2.40E-35 CL0029 Cme TR