Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01628 ATGAAGCGCTTCTTTAAACCAATAGAGAAGGAAGGGTCTTCGAAGAAACCGGCTCTCTCACCTTCCCTGAAAGATAATGATGATGATTCGGAATTATCAGCGCCGGACAAGAAAGAGCCTCTTAAATTTGTAACTTGGAATGCAAATAGTTTACTTCTCCGAGTTAAAAATGACTGGCCGGAGTTCACCAAGTTCGTGACTAACCTTGATCCGGATGCTATTGCCATACAAGAAGTAAGGATTCCTGCAGCAGGTTCAAAAGGTGCATCTAAAAACCAAGGAGAGTTGAAAGACGACACAAATATATCACGGGAAGAGAAGCAGATGTTGATGCGTGCTCTTTCCAGTCCACCCTTCGCAAATTATCGTGTTTGGTGGTCTCTTTCAGATTCCAAGTATGCTGGAACTGCATTGTTTATAAAAAAGTGTTTTCAACCAAAAAAGGTTTTCTTCAATCTAGACAGAATAGCTTCAAAGCATGAAGTGGATGGTCGCGTAATTTTAGCTGAATTCGAGACGTTTCGTTTATTGAATACATATTCGCCAAATAATGGGTGGAAGGAAGAGGAGAAGTCTTTTAAAAGGAGAAGAAAATGGGACAAGAGAATGTTGGAGTTTGTTATCCAATCTTCTGACAAGCCTCTTATATGGTGTGGTGACCTGAATGTTAGTCATGAAGAGATTGATGTGAGCCATCCAGATTTTTTCAGCGCAGCAAAACTTAATGGGTACATACCCCCAAATAAGGAGGATTGTGGGCAGCCTGGATTTACCTTGGCTGAAAGGAATCGTTTCAATGCTATATTGAAAGAAGGAAAGCTGATAGATGCATATAGATACCTGCACAAGGAGAAAGACATGGAACGTGGCTTTTCTTGGTCCGGGCACCCCATTGGAAAGTATCGAGGCAAAAGGATGAGAATTGACTATTTCATAGTTTCCGAGAGTCTCGTAGGTAGGATTGTTTCATGTGAGATGCATGGGCAAGGGATTGAACTAAAAGGTTTCTACGGAAGTGATCATTGCCCTGTTTCCCTCGAGCTGTCAGAAGCCAGTTCTTGCCCCGAGTCTCAAAAGAACTGA 1083 42.01 MKRFFKPIEKEGSSKKPALSPSLKDNDDDSELSAPDKKEPLKFVTWNANSLLLRVKNDWPEFTKFVTNLDPDAIAIQEVRIPAAGSKGASKNQGELKDDTNISREEKQMLMRALSSPPFANYRVWWSLSDSKYAGTALFIKKCFQPKKVFFNLDRIASKHEVDGRVILAEFETFRLLNTYSPNNGWKEEEKSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAAKLNGYIPPNKEDCGQPGFTLAERNRFNAILKEGKLIDAYRYLHKEKDMERGFSWSGHPIGKYRGKRMRIDYFIVSESLVGRIVSCEMHGQGIELKGFYGSDHCPVSLELSEASSCPESQKN 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23438839 23444572 - MELO3C002326.2.1 Cme12g01628 344845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01628 360 Pfam Endonuclease/Exonuclease/phosphatase family 44 341 IPR005135 GO:0003824
Cme12g01628 360 MobiDBLite consensus disorder prediction 1 36 - -
Cme12g01628 360 Gene3D Endonuclease/exonuclease/phosphatase 7 350 IPR036691 -
Cme12g01628 360 TIGRFAM xth: exodeoxyribonuclease III (xth) 41 348 IPR004808 GO:0004518|GO:0006281
Cme12g01628 360 SUPERFAMILY DNase I-like 41 348 IPR036691 -
Cme12g01628 360 MobiDBLite consensus disorder prediction 21 36 - -
Cme12g01628 360 PANTHER AP ENDONUCLEASE 30 352 IPR004808 GO:0004518|GO:0006281
Cme12g01628 360 PANTHER DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 30 352 - -
Cme12g01628 360 CDD Ape1-like_AP-endo 41 348 - -
Cme12g01628 360 ProSiteProfiles AP endonucleases family 1 profile. 41 350 IPR004808 GO:0004518|GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01628 - - - csv:101210880 707.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02027 Cme-Chr4:27752812 Cme12g01628 Cme-Chr12:23438839 6.23E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g891 Blo04g00709 . . . . . . . Cmo13g00807 . . . . . . Cpe20g00195 . . . . . . . . . . . . . . . Cone2ag0948 . . . Lsi02g00463 . Chy12g01207 Cme12g01628 . . . . . Bpe15g00664 Bma03g00757 . . . . Cma13g00776 . Car13g00622 . . . Bhi08g01692 Tan05g2896 . Lac10g0535 . . . Cla03g00320 Cam03g0336 Cec03g0328 Cco03g0342 Clacu03g0338 Cmu03g0944 Cre03g0637 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012061 0 2 1 1 1 0 1 0 0 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 1 1 1 2 5 1 29