Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01629 ATGCCTCTCAAGACCGAACATGGAGCATCCGACAGCTCCCTTGACGAGCATTCGAAGGCCGTCTATTCTTCTAAAGTCGTTGTTCTTGCTGACCTCAATGTTGATCCTCCAGAAATGGATGACGACAGTTGCGTTCACGTTTCAGCTTCGGCTATCTCCAGCAAAGAACCAAGCAAACTTGCCGGACAAAGAAACCTGACTTTCTTTGGAATCTTAATTGTCCACGGAACGATGTTATCTGTGGATGAGAGCAATCATGACAAAACTGTGGAAATTTGCAAGGATACTAATGCAATGGAAGTTGAAGGTAGACGTGTAAGCAAAATTGGAAAGTGCCGTTCAAGAAATAATAAGGTAGAGTACTCTCTTGATTCTGCAGCTGATCCAGATGGTGATCAACATGGTCAAGGTGTTTCAACTTCACGTGAAGAAAAAGTCAGCAGCCTCAAAACTGCTCTTGTAGCATATGAGAAGGCAGAAGAGATCCTACTCCAAAGTGATGTTGAGATTCACAGGCCAGAGTTTCTCTCGCTGGTCCAAATTCATCATGCACAGTGTCTCCTTCTAGAAAGTGTAGGGGATAATACTTCAAATGAAGAACTTGAACAGGAGGAGCTTGATGAGGTTTGTTCTAAACTTAAGCATTCAATGCAATCTGATGTAAGACAGGCAGCTGTGTGGAATACCCTAGGCTTGTTACTTCTTACAACTGGTCGAGTGAAGAGTGCTATTTCAGTGTTGTCGTCCCTGTTGGCCATTGTTCCTAACAATTGTGATTGTCTTGGAAACCTTGGAATTGCTTATCTTCAAAGTCGAGCTCAGGCTTGCATTGTACTTCCAATTTTTTCATCAGATATTCAGTATCTTTACTTGCAAGATCAAAATCATCCTGCTGCTCTCATCAACTATGCTGCTTTTCTCTTGTGCAAGCATGGTTCTACTGTTGTAGGTGCTGGAGCAAATGCTGGTGAAGGTGGTGTTGATGAGAAGGTTGTAGGTATGAATGTTGCAAAGGAATGTTTGCTAGCGGCCCTGAAGGTGGATCCAAAAGCAGCACATGCCTGGGCAAATCTTGCTAATGCCTATTTTGTGACTGGAGACCACAGAAGTTCTGCGAAGTGCTTGGAGAAGGGAGCAAAACTGGAGCCAAATTGCATGTCTATGAGATATGCCGTTGCTATGCACCGGCTGAAGGATGCAGAAAGGTCTCAAGATCGTAGTGAACAACTCTCCTGGGCTGGAAACGAAATGGCCTCAATCATTAGAGATGGAGATGGCTTGACAATTGATCATTCTGTAGCATGGGCTGGGCTTTCCATGGTTCACAAGACTCAACATGAAATTGCTGCAGGATTTCGTACAGATCAAAGTGAACTGAGAGAAAAGGAAGACCATGCCGTCTACAGTTTAAATCAGGCAATAGCTGAGGACACAGATGATGCTGTTCAGTGGCATCAACTCGGCCTCCATAGCCTCTGTACACGAGAATTTAAAACATCACAAAGATACCTCAAAGCCGCAATTGCCCGCTTTAAGAACTGTAGCTTTGCATGGTCAAACCTAGGTATCTCGTTACAACTCTCAGACAACCTGACAGAGGCAGAAGAAGTGTACAAGAAAGCTTTGTCATTGGTAGCCACAGAACAAGCACATACCGTATTTTGTAACCTTGGAAATCTATACCGACAGCAAAAGCAGTATGAACGTGCCAAAGCTATGTTCTCAAAGTCTTTAGAACTACAACCTGGTTATGCACCTGCATTTAACAATCTAGGATTAGTGTTTATTGCTGAGGGTCAATGGGAGGGGGCTAAGTATTGTTTTGAGAAAGCTCTCGAGGCTGATCCATTACTCGATTCAGCTAACTCGAACTTGCTTAAAACGGTAGCCGTACATCGACTATGTAATAGCTTATCGTCGTGTCATGTTAAAGATTGA 1938 43.55 MPLKTEHGASDSSLDEHSKAVYSSKVVVLADLNVDPPEMDDDSCVHVSASAISSKEPSKLAGQRNLTFFGILIVHGTMLSVDESNHDKTVEICKDTNAMEVEGRRVSKIGKCRSRNNKVEYSLDSAADPDGDQHGQGVSTSREEKVSSLKTALVAYEKAEEILLQSDVEIHRPEFLSLVQIHHAQCLLLESVGDNTSNEELEQEELDEVCSKLKHSMQSDVRQAAVWNTLGLLLLTTGRVKSAISVLSSLLAIVPNNCDCLGNLGIAYLQSRAQACIVLPIFSSDIQYLYLQDQNHPAALINYAAFLLCKHGSTVVGAGANAGEGGVDEKVVGMNVAKECLLAALKVDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLKDAERSQDRSEQLSWAGNEMASIIRDGDGLTIDHSVAWAGLSMVHKTQHEIAAGFRTDQSELREKEDHAVYSLNQAIAEDTDDAVQWHQLGLHSLCTREFKTSQRYLKAAIARFKNCSFAWSNLGISLQLSDNLTEAEEVYKKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKSLELQPGYAPAFNNLGLVFIAEGQWEGAKYCFEKALEADPLLDSANSNLLKTVAVHRLCNSLSSCHVKD 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23445866 23454203 - MELO3C002325.2.1 Cme12g01629 344846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01629 645 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 9 154 - -
Cme12g01629 645 Gene3D Tetratricopeptide repeat domain 464 549 IPR011990 GO:0005515
Cme12g01629 645 Gene3D Tetratricopeptide repeat domain 194 415 IPR011990 GO:0005515
Cme12g01629 645 ProSiteProfiles TPR repeat profile. 585 618 IPR019734 GO:0005515
Cme12g01629 645 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 152 643 - -
Cme12g01629 645 SUPERFAMILY TPR-like 214 394 IPR011990 GO:0005515
Cme12g01629 645 Pfam Tetratricopeptide repeat 352 385 IPR019734 GO:0005515
Cme12g01629 645 ProSiteProfiles TPR repeat profile. 224 257 IPR019734 GO:0005515
Cme12g01629 645 ProSiteProfiles TPR repeat profile. 515 548 IPR019734 GO:0005515
Cme12g01629 645 Pfam Tetratricopeptide repeat 552 615 - -
Cme12g01629 645 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 152 643 - -
Cme12g01629 645 ProSiteProfiles TPR repeat profile. 551 584 IPR019734 GO:0005515
Cme12g01629 645 MobiDBLite consensus disorder prediction 121 144 - -
Cme12g01629 645 SUPERFAMILY TPR-like 461 616 IPR011990 GO:0005515
Cme12g01629 645 Gene3D Tetratricopeptide repeat domain 550 628 IPR011990 GO:0005515
Cme12g01629 645 ProSiteProfiles TPR repeat region circular profile. 551 582 - -
Cme12g01629 645 Coils Coil 644 645 - -
Cme12g01629 645 ProSiteProfiles TPR repeat profile. 352 385 IPR019734 GO:0005515
Cme12g01629 645 ProSiteProfiles TPR repeat region circular profile. 585 616 - -
Cme12g01629 645 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 9 154 - -
Cme12g01629 645 SMART tpr_5 585 618 IPR019734 GO:0005515
Cme12g01629 645 SMART tpr_5 224 257 IPR019734 GO:0005515
Cme12g01629 645 SMART tpr_5 352 385 IPR019734 GO:0005515
Cme12g01629 645 SMART tpr_5 515 548 IPR019734 GO:0005515
Cme12g01629 645 SMART tpr_5 551 584 IPR019734 GO:0005515
Cme12g01629 645 SMART tpr_5 481 514 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01629 - - - csv:101210395 1095.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01177 Cme-Chr8:8331812 Cme12g01629 Cme-Chr12:23445866 4.03E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32