Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01631 ATGGCGCTTGTTCACCAACACCATCTCACATTCCCATTTCTTTCCATTGGCAAGGCCAATCTGAAACAGAACACTTCCAATTCTTGTTCATTTTTTCAATCCAATACCCAGAAGCTCGCCTGCTGCTTATGTGCAGCATCGCCGAACCCGACCACTCAATCTCCATCCCCCATTTTCCTCCATTTTCTCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGAAGTTCCTTCTAAGGAAGTTCATGGAGGTAACAAGACGGAAGAGGATTGGAACGACCCGTTATTCAGATTTTTCAAATCCCGAACTTCAACCACGCAAGACCCATCACGTGAAAGCAAATTGTCCCTCCAAAAGAACCGCCGTTCGTCCTGGCATCTTGCCTCCGATGTTGAGTTTTTCAATGAAGCTGAAGTTACACTCGAGGAAGACAAGGAACAATTGGGTTCTGCGAGTCGAAATTCTAGGGTCTTACCGGATGGTCTTGTCGGAGAAATAGTGGGAATTGCGAGGAATTTGTCGCAAAATATGACTCTGGGGGAGGCTTTGGGAGAATTTGAAGGAAGAATTAGTGAGAAAGAATGTTTGGAGGTGCTACGTTTGTTGGGTGAGGAGAATCTTGTGGAGACTTCGCTTGTTACATCTCGTGCTTATTCTCTTCTTTTCCCATTATTGGGAAGAGCTGGAATGGGAGAGAAAATTATGGTCTTGTTCAAGAACCTTCCTCTCAGGAAGGAATTTCAGGATGTTCATGTCTATAATTCTGCAATGTCTGGACTTATGGTCTGTAAGAGGTATGATGATGCTTGCAAGGTGTACGAGGCCATGGAAACAAATAATGTTAATCCAGATCATGTGACATGTTCTATAATGATTACAGTTATGAGAAAAATTGGCCGTAGTGCAAAGGATTCATGGGATTACTTTGAGAAAATGAACCAAAAAGGAGTAAAATGGAGTTCAGAAGTTTTGGGTGCTCTGATTAAATCATTCTGCGATGAGGGGCTGAAGAGTCAAGCACTTATCATACAATTAGAGATGGAGAAGAAAGGGGTTGCTTCGAATGTGATCATGTATAATACGATCATGGATGCTTTTAGTAAATCAAATCAAATCGAGGAAGCTGAAGGTGTCTTTGCTGAAATGAAATCTAAAGGAGTGAAACCTACGAGTGCAAGTTTTAACATCTTGATGAATGCATACAGTAGGAGGATGCAACCTGAGATTGTTGAGAAGCTTTTGGTTGAAATGAAGGATATGGGATTGGAGCCTAATGTAAAGTCATACACTTGCTTGATTAGTGCTTATGGGAGGCAGAAGAAAATGAGTGACATGGCTGCCGATGCATTTTTGAGAATGAAAAAAAATGGTATTAGGCCAACCTCTCATTCATATACAGCTCTGATTCATGCTTATTCTGTTAGCGGTTGGCATGAGAAAGCTTACTCAATATTTGAGAACATGTTGCGTGAAGGTTTAAAGCCATCCATTGAAACTTACACGACTCTACTCGATGCATTTAGGCGTGCTGGTGATACAGTGTCGTTGATGAAAATATGGAAGTTAATGATTAGAGAAAAAATAGTAGGGACAAGAGTAACATTTAACATACTGCTAGATGGGTTTGCAAAACAAGGTCATTATGTTGAAGCAAGAGATGTGATCTCCGAGTTTGATAAGATTGGGTTACAACCAACTGTTATGACATACAACATGTTGATGAATGCATATGCTAGGGGAGGTCAACATTTAAAGATGCCACAGCTGCTGCAAGAGATGGCTGCTCGGGAACTAAAACCCGACTCCGTTACTTATTCTACCATGATTTACGCCTTTGTACGTGTTCGCGATTTCAAAAGAGCTTTCTTCTATCACAAGAAGATGGTAAAAAGTGGACAAGTGCCTGATGTAAAGTCATACCAGAAACTTAAATCGATCTTGGATGTAAAACTTGCTACAAAGAACAGGAAAGACAAGAGTGCCATTCTTGGTATAATAAACAGCAAAATGGGTATGGTGAAAGCAAAGCAGAAAGGCAAGAAAGATGAGTTTTGGAAGACCAAGAGAAGGCATGTAAGAACTTAG 2097 40.77 MALVHQHHLTFPFLSIGKANLKQNTSNSCSFFQSNTQKLACCLCAASPNPTTQSPSPIFLHFLQEEEEEEEEEEVEEEEVPSKEVHGGNKTEEDWNDPLFRFFKSRTSTTQDPSRESKLSLQKNRRSSWHLASDVEFFNEAEVTLEEDKEQLGSASRNSRVLPDGLVGEIVGIARNLSQNMTLGEALGEFEGRISEKECLEVLRLLGEENLVETSLVTSRAYSLLFPLLGRAGMGEKIMVLFKNLPLRKEFQDVHVYNSAMSGLMVCKRYDDACKVYEAMETNNVNPDHVTCSIMITVMRKIGRSAKDSWDYFEKMNQKGVKWSSEVLGALIKSFCDEGLKSQALIIQLEMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSIFENMLREGLKPSIETYTTLLDAFRRAGDTVSLMKIWKLMIREKIVGTRVTFNILLDGFAKQGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKMPQLLQEMAARELKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIINSKMGMVKAKQKGKKDEFWKTKRRHVRT 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23462000 23466163 - MELO3C002322.2.1 Cme12g01631 344848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01631 698 MobiDBLite consensus disorder prediction 65 94 - -
Cme12g01631 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Cme12g01631 698 MobiDBLite consensus disorder prediction 65 79 - -
Cme12g01631 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 464 IPR002885 -
Cme12g01631 698 Coils Coil 60 80 - -
Cme12g01631 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Cme12g01631 698 PANTHER OS03G0856100 PROTEIN 1 698 - -
Cme12g01631 698 Gene3D Tetratricopeptide repeat domain 450 698 IPR011990 GO:0005515
Cme12g01631 698 Gene3D Tetratricopeptide repeat domain 307 449 IPR011990 GO:0005515
Cme12g01631 698 MobiDBLite consensus disorder prediction 80 94 - -
Cme12g01631 698 Gene3D Tetratricopeptide repeat domain 172 306 IPR011990 GO:0005515
Cme12g01631 698 Pfam PPR repeat 537 566 IPR002885 -
Cme12g01631 698 PANTHER - 1 698 - -
Cme12g01631 698 TIGRFAM PPR: pentatricopeptide repeat domain 573 606 IPR002885 -
Cme12g01631 698 TIGRFAM PPR: pentatricopeptide repeat domain 607 641 IPR002885 -
Cme12g01631 698 TIGRFAM PPR: pentatricopeptide repeat domain 537 566 IPR002885 -
Cme12g01631 698 TIGRFAM PPR: pentatricopeptide repeat domain 397 430 IPR002885 -
Cme12g01631 698 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Cme12g01631 698 TIGRFAM PPR: pentatricopeptide repeat domain 432 465 IPR002885 -
Cme12g01631 698 TIGRFAM PPR: pentatricopeptide repeat domain 503 533 IPR002885 -
Cme12g01631 698 TIGRFAM PPR: pentatricopeptide repeat domain 467 500 IPR002885 -
Cme12g01631 698 TIGRFAM PPR: pentatricopeptide repeat domain 256 288 IPR002885 -
Cme12g01631 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Cme12g01631 698 Pfam Pentacotripeptide-repeat region of PRORP 344 511 IPR033443 -
Cme12g01631 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 605 639 IPR002885 -
Cme12g01631 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cme12g01631 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Cme12g01631 698 Pfam PPR repeat family 253 298 IPR002885 -
Cme12g01631 698 Pfam PPR repeat family 569 617 IPR002885 -
Cme12g01631 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Cme12g01631 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01631 - - - csv:101209816 1291.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01631 Cme-Chr12:23462000 Cme02g00612 Cme-Chr2:6939285 6.74E-18 dispersed
Cme12g01631 Cme-Chr12:23462000 Cme01g02021 Cme-Chr1:28794949 3.44E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48