Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01634 ATGGCACCGCCTACAGTCCCTCTCTCTCTCCTTTCCCTCTTCCTCTTCTCCATTTCTCTCTCCGCCGCTCTCTCCTCCGCCCCTGCTGCCGTTTCTGACCCAGAACTCGTCGTACAAGAAGTACACAGGAGCATAATCAATGCAACGAAGAGGAGGAATTTGGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGATTCCAATTGGGAGAAAAATCGTCAGAGATTAGCTGATTGTGGGATCGGTTTCGGCAAAAACGCCATCGGCGGTCGAGACGGCAAAATCTACGTCGTTACTGACGCCGGTGACGACGACCCCGTCAACCCCAAACCAGGAACTCTCCGTTACGCCGTCATCCAAGACGAACCCCTTTGGATCATCTTCGCTCGCGACATGGTCATTCGATTGAAAGAGGAACTGATTATGAATTCCTTCAAGACCATAGACGGCCGTGGCGCTAGTGTCCATATCGCCGGTGGGCCTTGCATTACGATTCAGTACGTGACGAACATTATAATCCATGGTCTCAACATTCACGACTGTAAACCAGGGGGAAACACAGATGTGAGAGATTCCCCTCGACATTTTGGATTCAGAACCATATCGGACGGTGACGGCGTTTCAATCTTCGGCGGAAGCCATGTTTGGGTCGATCATTGCTCTTTATCAAACTGCAATGACGGGTTAATCGACGCGATTCATGGGTCTACAGCGATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCATAGCGATTCGTATACTCAGGACAAGAATATGCAAGTCACCATTGCTTTTAATCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAACAATGACTATACACATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACCATCAACAGTCAAGGGAACAGATTTGTTGCTCCAAATGACAGATTCAGCAAAGAGGTGACAAAATACGAGGATGCACCAGAGAGTGAGTGGAAGAATTGGCATTGGAGGTCTGAAGGAGATCTGATGTTAAACGGGGCGTTTTTCACGTCCTCAGGAGCCGGAGCATCATCCAGTTATGCAAGAGCGTCGAGCTTAGGAGCGAGACCATCGTCGCTCGTCGGTACAATTACGACCAATGCAGGTGCACTGAACTGCAGAAAGGGCTCCCGCTGCTGA 1236 49.19 MAPPTVPLSLLSLFLFSISLSAALSSAPAAVSDPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGKIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTSSGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23484887 23487773 + MELO3C002319.2.1 Cme12g01634 344851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01634 411 PANTHER PECTATE LYASE 18-RELATED 14 408 IPR045032 GO:0030570
Cme12g01634 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Cme12g01634 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Cme12g01634 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Cme12g01634 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Cme12g01634 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cme12g01634 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cme12g01634 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Cme12g01634 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Cme12g01634 411 SMART amb_all 137 334 IPR002022 -
Cme12g01634 411 Pfam Pectate lyase 147 328 IPR002022 -
Cme12g01634 411 Gene3D - 62 404 IPR012334 -
Cme12g01634 411 PANTHER PECTATE LYASE 14 408 - -
Cme12g01634 411 SUPERFAMILY Pectin lyase-like 36 406 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00660 Cme-Chr5:7209670 Cme12g01634 Cme-Chr12:23484887 0 dispersed
Cme06g00410 Cme-Chr6:2629054 Cme12g01634 Cme-Chr12:23484887 0 dispersed
Cme08g01275 Cme-Chr8:9216899 Cme12g01634 Cme-Chr12:23484887 2.52E-179 dispersed
Cme10g00106 Cme-Chr10:731398 Cme12g01634 Cme-Chr12:23484887 2.48E-178 dispersed
Cme12g01514 Cme-Chr12:22681442 Cme12g01634 Cme-Chr12:23484887 7.49E-148 dispersed
Cme09g00452 Cme-Chr9:4346244 Cme12g01634 Cme-Chr12:23484887 0 transposed
Cme12g01634 Cme-Chr12:23484887 Cme03g02206 Cme-Chr3:28973335 6.85E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01634 K01728 - csv:101209736 786.178