Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01643 ATGTTCATCCTTCCATGTCTCAATGAATCTCTCACCTCATTCTCCACACTCATCTTCTTCATTTCTCTTCTCCTTCTCCTTCTAATCCCCAAACTCAAATCAAAACCCAACCAAAATCTCCCACCATCCCCACCAAAACTTCCTTTAATTGGAAACCTCCACCAGCTAAACCACCATCCCCATCTCTGTTTCCACCGCCTCTCTCAAAAGTTCGGTCCCATCATCCTCCTTCAACTCGGACAAATCCCAACTCTCATAATCTCATCACCAAAAGTCACCAAAGAAGCCTTCAAAACCCACGACCTCTACTTCTCAAGCCGCCCCCTTCTCTTCTCCGCCCAACACATCTTCTACAACTGCACTGACATTGCCTTTGCCCCTTACGGCTCTTACTGGCGCCAAGTCAGAAAAATCTGCATCCTCCAACTCCTTAATGCCAAAAGGGTCCAATCCTTTGCCTTCATTCGACAACAAGAAGTTGCCCGTTTGGTAAAAAGAATCTCCCACTCCAACAATCCGGTCGATTTGTCCAACTTGTTAGCGATGTATGGTAATGATGTGATCTGCCGAATGGCGCTTGGGAGGGAATTTTCCGCCGGTGGTGCGTACCATCTTCACGGGATTCAAGAATTACTCGAAGAGTATCAGCTTTTGCTTCGTGGGTTCTGTTTTGGGGATTTGTTCCCTTCCTTTTCATTTATCAGTAATCTAACAGGGTTGAAATCGAGGCTTGTAAGGACGTTTAAAAGGTTCGATAAGTTGCTTGATCAAGTAATAGTTGAACATCAGAGTCCCGAGGGAGAGAAACTTGGAGAATCTAAGGATCTTGTTGATGTTTTGCTTGATATACAAAAGAATGGATATAATGATAGACTTCCCCTGACTATGGATAATGTTAAAGCCATTCTTTTGGACATGTTTATTGCAGGGACTGAAACGACGTTTACAGCTCTTGATTGGGGGATGACGGAGCTAATAACACACCCAAAGGTCATGGAAAGAGCACAAAACGAAATTCGAGGCATTGTTGGTGAGAGAAAAATTGTAACAGAGGATGATGTTTTAGAAATGCATTACTTGAAAGCTGTGGTTAAAGAGGTGCTCCGATTGCATCCACCAGCGCCGCTTGCACTCCCAAGAGAAACTACAAAAAATGTGAGGATTGAAAGTTACGATATTCCAGCTAAAACAAGGGTTTTTGTGAATGTTTGGGGAATTGGGAGAGACCCAGAATCGTGGAAGAACCCAGAAAGTTTTGAGCCAGAGAGATTTATAGAGAATGAAGTTGATTACAGAGGGCTGAATTTTGAGTTCATTCCGTTTGGAGTTGGAAGAAGGATTTGTCCAGGTATTACTATGGGGATCGCCATGATTGAGATAGCTTTTGCTCAGATTTTGCATAGCTTTGATTGGGAGCTTCCAAATGGGATTGAAGTTAAGGATTTAGATATGACCGAAGTTGTTGGTGTCACAATGCATAGAAAAGCTCACTTGGAGGTTGTAGCAAAACCCTACTTTGGTTCATCCCTCACAAATTAA 1539 43.08 MFILPCLNESLTSFSTLIFFISLLLLLLIPKLKSKPNQNLPPSPPKLPLIGNLHQLNHHPHLCFHRLSQKFGPIILLQLGQIPTLIISSPKVTKEAFKTHDLYFSSRPLLFSAQHIFYNCTDIAFAPYGSYWRQVRKICILQLLNAKRVQSFAFIRQQEVARLVKRISHSNNPVDLSNLLAMYGNDVICRMALGREFSAGGAYHLHGIQELLEEYQLLLRGFCFGDLFPSFSFISNLTGLKSRLVRTFKRFDKLLDQVIVEHQSPEGEKLGESKDLVDVLLDIQKNGYNDRLPLTMDNVKAILLDMFIAGTETTFTALDWGMTELITHPKVMERAQNEIRGIVGERKIVTEDDVLEMHYLKAVVKEVLRLHPPAPLALPRETTKNVRIESYDIPAKTRVFVNVWGIGRDPESWKNPESFEPERFIENEVDYRGLNFEFIPFGVGRRICPGITMGIAMIEIAFAQILHSFDWELPNGIEVKDLDMTEVVGVTMHRKAHLEVVAKPYFGSSLTN 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23555906 23557533 - MELO3C035538.2.1 Cme12g01643 344860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01643 512 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 15 505 - -
Cme12g01643 512 Pfam Cytochrome P450 41 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 SUPERFAMILY Cytochrome P450 41 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Cme12g01643 512 Gene3D Cytochrome P450 33 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01643 512 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 15 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01643 - - - csv:101209244 878.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g00554 Cme-Chr12:9731062 Cme12g01643 Cme-Chr12:23555906 0 dispersed
Cme12g01643 Cme-Chr12:23555906 Cme12g01653 Cme-Chr12:23608166 3.98E-147 dispersed
Cme12g01642 Cme-Chr12:23549666 Cme12g01643 Cme-Chr12:23555906 0 tandem
Cme12g01643 Cme-Chr12:23555906 Cme12g01644 Cme-Chr12:23559875 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g861 . . Bda06g00623 Bda15g00532 . . . Bma12g01061 . Cmo18g00175 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0183 . Lsi02g00436 Csa01g00909 Chy12g01217 Cme12g01643 Blo13g00154 Blo15g00245 . . . . . . . . . . . . . . . Bhi08g01683 . . . Hepe07g2179 . . Cla03g00302 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002472 0 1 0 1 0 4 0 3 2 3 3 4 0 3 2 0 4 4 0 3 5 3 2 2 1 3 1 2 1 1 58