Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01644 ATGCCTATCCTTCCTTCTTTCAACGAATCCTTCACCTCATTCTTCACATTCATCTTCTTCATTTCTCCCCTGATTCTCCTTCTAATCCCCTATCTCAAATCAAAACCCAACAAAAATCTCCCACCCTCCCCACCAAAACTTCCCATTATCGGCAACCTCCACCAACTCGGCCGCAATCCCCACCTCTGTTTCCGCCGCCTCTCCCAAAAATTCGGCCCCATCTTCCTCCTTCAACTCGGACAAATCCCAACTCTCGTAGTTTCATCTCCAAAAATCGCTAAACAAGTCTTCAAAACCCACGACCTCGCTTTCTCAAGCCGCCCTTTTCTCTTCTCCGCCCAACACATCTTCTACAACTGCACCGACATCGTTTTTTCCCCTTACGGTTCTTACTGGCGCCAAGTCAGAAAAATTTGCATCCTCCAACTCCTTAGCGCCAGAAGGGTTCAATCCTTTTCCCTCATTCGACAGCAAGAAGTTGCCCGTTTGGTTGATAGAATTTCACACTCAAAGGATCGAGTGAATTTGTCGAGCTTGTTGGGGTTGTATGCTAATGATGTCCTCTGTCGAGCGGCGCTTGGGAGGGAATTTTCCGCCGGTGGTGAGTACCATCTTCATGGCTTTCAAAAGTTGCTTGAAGAGTATCAGATTTTGCTTGGTGGGTTTTGTATTGGGGATTTGTTCCCTTCTCTTGCTTTTCTTAGTAACTTCACAGGAATGAAATCTAGGCTTGTTAGAACAGCTAACGGGTTCGATAAATTGTTTGATCAAGTTATAGCCGAACATCTCGATCCCGAGAGAGAAAAACTGGAGGAGTCGCAGGATCTTGTTGATATTTTGCTTGAGATACAAAAGAATGGATCTGATGATAAAATTCCACTGACTATGGATAACGTTAAGGCCATCATTTTGGATATGTTTGCAGCAGGGACAGACACGACATTTATAGCTCTTGATTGGGGGATGACGGAGCTCATAACACACCCAAATGCCATGAAAAGAGCACAAAGCGAAATTCGTAGAGTTGTTGGTGATAGAAGAAATGTAACAGAGAGTGATCTTTTAGAAATGCCTTACTTGAAAGCTGTGGTTAAAGAGGTGCTTCGATTACATCCACCGGCGCCAGTTTTAGTTCCGAGAGAAACTACGGAAGATGTGAGGATTGAAGGGTATGATATTCCAGCTAAAACAAGAGTTTTTGTGAATGCTTGGGGAATTGGGAGAGACCCAGAATCATGGAAGGACCCTGAAACTTTTGAGCCCGAGAGGTTTTTAGGAAGTGAGGTTGATTATGGAGGATTGGATTTTGAGTTCATTCCATTTGGAGCTGGAAGAAGGATTTGTCCAGGTATTACTATGGGGATAGCCACGATTGAGCTTGCTTTGGCTCAAATTTTGCACAGCTTTGATTGGGAACTTCCTAATGGAATTGAAGCTAAAGATTTGGATATGACTGAAGTTTTTGGTATCACAATGCATAGAAAAGCTCACTTGGAAGCTGTGCCAAAACCTTACTTTACGTAA 1524 43.77 MPILPSFNESFTSFFTFIFFISPLILLLIPYLKSKPNKNLPPSPPKLPIIGNLHQLGRNPHLCFRRLSQKFGPIFLLQLGQIPTLVVSSPKIAKQVFKTHDLAFSSRPFLFSAQHIFYNCTDIVFSPYGSYWRQVRKICILQLLSARRVQSFSLIRQQEVARLVDRISHSKDRVNLSSLLGLYANDVLCRAALGREFSAGGEYHLHGFQKLLEEYQILLGGFCIGDLFPSLAFLSNFTGMKSRLVRTANGFDKLFDQVIAEHLDPEREKLEESQDLVDILLEIQKNGSDDKIPLTMDNVKAIILDMFAAGTDTTFIALDWGMTELITHPNAMKRAQSEIRRVVGDRRNVTESDLLEMPYLKAVVKEVLRLHPPAPVLVPRETTEDVRIEGYDIPAKTRVFVNAWGIGRDPESWKDPETFEPERFLGSEVDYGGLDFEFIPFGAGRRICPGITMGIATIELALAQILHSFDWELPNGIEAKDLDMTEVFGITMHRKAHLEAVPKPYFT 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23559875 23561824 - MELO3C002314.2.1 Cme12g01644 344861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01644 507 SUPERFAMILY Cytochrome P450 41 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 Pfam Cytochrome P450 41 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 14 506 - -
Cme12g01644 507 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 14 506 - -
Cme12g01644 507 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01644 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Cme12g01644 507 Gene3D Cytochrome P450 31 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01644 - - - csv:101208594 903.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02011 Cme-Chr2:26320246 Cme12g01644 Cme-Chr12:23559875 2.35E-159 dispersed
Cme10g00599 Cme-Chr10:3817059 Cme12g01644 Cme-Chr12:23559875 1.45E-140 dispersed
Cme10g01696 Cme-Chr10:23512811 Cme12g01644 Cme-Chr12:23559875 3.03E-135 dispersed
Cme12g01642 Cme-Chr12:23549666 Cme12g01644 Cme-Chr12:23559875 0 dispersed
Cme12g01644 Cme-Chr12:23559875 Cme12g01653 Cme-Chr12:23608166 1.04E-152 dispersed
Cme12g01643 Cme-Chr12:23555906 Cme12g01644 Cme-Chr12:23559875 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g856 . . . . . . . . . Cmo18g00169 . Cma11g00063 . . . . . Bhi02g00595 . . . . . . . . . . . . . . . . Cone19ag0174 Lsi02g00430 Csa01g00908 Chy12g01221 Cme12g01644 Blo13g00162 . . . . . . . . . Cmo11g00066 . . . . . . Bhi08g01677 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002472 0 1 0 1 0 4 0 3 2 3 3 4 0 3 2 0 4 4 0 3 5 3 2 2 1 3 1 2 1 1 58