Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01648 ATGGATCCAACATCCCACAAAAATCTCCACCAACTTCTACACCAGATTACTCAATCTGCATATGGTCAAAGCATCATTATTCACTTCAATCTCATCCCTTTTCCTCTCATCTTTTTCTTCCTTTTCCTCTTCTTCCTAATTTCACTTAAACTCTTATCCACCAAAAACCCAGAAATCAAGAACTTACCACCATCACCACCACAACTCCCAATAATTGGCAACCTTCACCAATTAGGCAGCCTCCCACATCGCTCATTGGCATGTCTTTCAGAGAAATATGGCCATCTAATGCTCCTAAAACTTGGCCAAACCCCTACACTCATTGTCTCTTCTTCAAAACTAGCAAAAGAAGTAATGAAATCCCATGATATCATCTTCTCAAGCAGATCCCAAAACACAGCTGAAAAATCCTTATTTTATGGATGCCGTGATCTGGCCTTTGCTTCCTATGGAGAGCATTGGAGACAAGCCAAAAAATTGTCTGTTTTGGAGCTTTTGAGTCCAAAAAGAGCTGAGTATTTCCAATATATTAGAGATGAAGAAGTTGGAAAGCTCGTGAAAAGGATTGGTGGTGAGTCGTCTGGTGTGATCAATCTCAACCAACTTCTGGTATCAACTTCAAACCATATAGTGGGGAGAGGTGTTTTGGGTGAGAAATTTAAGGAAGAAAATGATGGGTTTGGTGAAGTTACAAGGAAGGCCATGGTGCTTTTAACAAGGTTTTGTGTTGGGGATGCTTTTCCTTGGTTTGGATGGATTGATGTGTTGAGAGGATTTCGTGCAGAACTCAAAGCTTGTTTTGAAACATTGGATAAGCTTCTTGAGAAAGTGATTGAAGAACGTAGGGAAAAATTGAAGATGGGTGATGATAATAATGGATGTTGTGATGAAAAGGATTTTGTGGGGATTATGCTCAAATTGCAACAACAAGATGCTCTTCATTATCATTTCACTTTGGAAGATTTCAAAGCAATTTTACTGGATATGTTTGTAGGTGGAACGGACACGACAGCAATAGGTTTAGAATGGACAATGGCAGAGCTGATGAGAAACCCAACAATCATGAAAAAAGTTCAAGAGGAGGTCAGAACAATAGTTGGTAAAAAATCAAAGATTGAAACAAACGACATTCAAAAGATGGATTACATGAAATGTATTATAAAAGAGTCTCTAAGGCTCCACCCACCATCTCCTTTATTGCTGCCACGAGAAACCATGGGAAGTGTCAACCTTGAAGGCTACCAAATTCCATCAAAAACAGGGGTTTTGATCAATGCTTGGGCAATTCAAAGAGACCCCAAAATGTGGGAAAGACCAAATCAGTTCGTTCCAGAGAGATTCATGGAGGAAAAGAAATCAATTGATTTCAAAGGTCATGACTTTGAGTTTATTCCATTTGGGAGTGGAAGAAGGAAGTGCATTGGAATGTCATTTGGGATTGCTTCTTTTGAATATGTATTGGCCAATCTTCTTCATTGGTTTGATTGGAAGCTTCCAGATGGGGAGTTGTTGGATATGACTGAACAACATGGCCTCTCCGTTTTCAAGAAGCTTCCTCTCAAGCTTATTCCAACTCCATATTCTCTCTAA 1590 39.43 MDPTSHKNLHQLLHQITQSAYGQSIIIHFNLIPFPLIFFFLFLFFLISLKLLSTKNPEIKNLPPSPPQLPIIGNLHQLGSLPHRSLACLSEKYGHLMLLKLGQTPTLIVSSSKLAKEVMKSHDIIFSSRSQNTAEKSLFYGCRDLAFASYGEHWRQAKKLSVLELLSPKRAEYFQYIRDEEVGKLVKRIGGESSGVINLNQLLVSTSNHIVGRGVLGEKFKEENDGFGEVTRKAMVLLTRFCVGDAFPWFGWIDVLRGFRAELKACFETLDKLLEKVIEERREKLKMGDDNNGCCDEKDFVGIMLKLQQQDALHYHFTLEDFKAILLDMFVGGTDTTAIGLEWTMAELMRNPTIMKKVQEEVRTIVGKKSKIETNDIQKMDYMKCIIKESLRLHPPSPLLLPRETMGSVNLEGYQIPSKTGVLINAWAIQRDPKMWERPNQFVPERFMEEKKSIDFKGHDFEFIPFGSGRRKCIGMSFGIASFEYVLANLLHWFDWKLPDGELLDMTEQHGLSVFKKLPLKLIPTPYSL 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23574628 23580076 + MELO3C002311.2.1 Cme12g01648 344865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01648 529 Gene3D Cytochrome P450 48 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 38 526 - -
Cme12g01648 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506|GO:0016705
Cme12g01648 529 Pfam Cytochrome P450 63 522 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS E-class P450 group I signature 90 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS E-class P450 group I signature 114 135 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS E-class P450 group I signature 206 224 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS E-class P450 group I signature 321 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS E-class P450 group I signature 341 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS E-class P450 group I signature 384 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS E-class P450 group I signature 425 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS P450 superfamily signature 332 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS P450 superfamily signature 385 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PRINTS P450 superfamily signature 473 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 SUPERFAMILY Cytochrome P450 63 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01648 529 PANTHER CYTOCHROME P450 71B11-RELATED 38 526 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01648 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101208836 901.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01648 Cme-Chr12:23574628 Cme12g01653 Cme-Chr12:23608166 0 dispersed
Cme12g01650 Cme-Chr12:23599035 Cme12g01648 Cme-Chr12:23574628 2.25E-106 dispersed
Cme12g01646 Cme-Chr12:23568323 Cme12g01648 Cme-Chr12:23574628 0 proximal
Cme12g01647 Cme-Chr12:23570685 Cme12g01648 Cme-Chr12:23574628 1.70E-82 tandem
Cme12g01648 Cme-Chr12:23574628 Cme12g01649 Cme-Chr12:23585241 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g854 . . . Bda15g00533 . . . . . Cmo18g00168 Cma10g00089 . . . . . Cpe04g01587 Bhi02g00596 . . . . . . . . . . . . . . . . . Lsi02g00427 Csa01g00906 Chy12g01222 Cme12g01648 . . . . . . . . . Cmo10g00091 . . Cma18g00201 . . . . Bhi08g01673 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228