Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01649 ATGGATCAAGACTCAAATTCCCAACACCTTTGGCTACAACTTCAACCACCATCAATATTTCAAGCCAATCCTATCTCTATTTCCTTTTGCCTTTTCTTCTTCTTCCTCCTTTTGCTAAAGCTATTTCTAAGCAAAAAACAAAGCCCCAATTTCCCTCCTTCACCACCCAAACTTCCCATCATTGGCAACCTTCACCAATTAGGAACCTTACCACACCAATCTTTAGCTTCCCTTTCCAACAAATATGGTCCTCTCATGCTCCTCAAACTAGGCCAAACCCCAACTCTAGTGGTTTCCTCACCAAAAGTGGCTGGAGAAATTATGAAGACCCATGACCTTAAATTCTCCAATAGACCCAAAACCACAGCCACAAATCTCATGTTCTATGGTTGCCAAGATGTGGGTTTTGCCCCATATGGTGATTATTGGAGAAAAGCTAAAAAAATGTGTGTTCTTGAGCTTTTTAGCCACAAAAGAGTTGAGTCTTTTCAATATGTTAGAGATGAAGAAGTTGATATTCTTATCAACAAAATTCGTAAGAGAGCTAATTGTAGTGAGGGTTTGAATCTTACCCAATTATTGTTTCAAATCTCAAACGATATAGTGTCAAGATGTGTTCTGGGGAAGAAATTTGAGGATGAAAATGGGAAGAGCGAATTTAGAGACGTGCACTCAAGAAGAGTAATGGAGTTACTCGCAGCTTTTTGTGTGGGGGATTTCTTTCCTAATTTTGGATGGGTTGATGTTATTAGAGGAGTGGTTGGGGAAATGAAAAAGGTTTCTAAGATAATGGATGGATTCTTTGATATGGTGATTGAAGACCACATCATAAAGTTGAAATCAAGTGATAGATGCGACGATAAAAAGGATTTTGTGGATATCATGTTGCAGCAGCTCAACGATGAAGATGACATGTTTCATGACCATTTCACTAGAGACAACCTCAAAGCCATCTTAACGGACATGTTCGTAGGAGGGACAGACTCAACAGCAACATTATTAGAATGGACAATGGCAGAGTTGTTAAGAAATCCAAACACCATGAAGAAAGTCCAACAAGAAATAAGAACAATAGTTGGAAAAAACAAGACAAAAGTTGAAACAAAGGACATTAACAAAATGGAGTACATGAAATGTGTAATGAAAGAATCTCTAAGATTACACCCATCACTTCCTCTACTTGTACCTCGAGAAACAACCACAGACGTGGTTGACATCGAAGGGTACCATGTGGCAGCAGGAACAAGTGTGTTTGTGAACGTATGGGCAATTCAAAGAGACCCCAAAATATGGGAAAACCCAAACCAGTTCATCCCAGAGAGATTTATGGAGGAAAATAAATCGATTATTGATTTTAAAGGGTCAGATTTTGAGTTGGTTCCATTTGGAAGTGGAAGAAGGAAATGCCCTGGAATAGGGTTTGGAAGTGCTGCTTATGAATGTGTATTGGCCAATCTTTTGTATTGGTTTGATTGGAAGATGGTCGAGGATATGAAAGGAGAAACGTTGGATATGACCGAAGAACATGGAATCACTGTTCATAAGAAATTTCCTCTTTGTCTCATCCCATTACCATATAATTAA 1584 38.76 MDQDSNSQHLWLQLQPPSIFQANPISISFCLFFFFLLLLKLFLSKKQSPNFPPSPPKLPIIGNLHQLGTLPHQSLASLSNKYGPLMLLKLGQTPTLVVSSPKVAGEIMKTHDLKFSNRPKTTATNLMFYGCQDVGFAPYGDYWRKAKKMCVLELFSHKRVESFQYVRDEEVDILINKIRKRANCSEGLNLTQLLFQISNDIVSRCVLGKKFEDENGKSEFRDVHSRRVMELLAAFCVGDFFPNFGWVDVIRGVVGEMKKVSKIMDGFFDMVIEDHIIKLKSSDRCDDKKDFVDIMLQQLNDEDDMFHDHFTRDNLKAILTDMFVGGTDSTATLLEWTMAELLRNPNTMKKVQQEIRTIVGKNKTKVETKDINKMEYMKCVMKESLRLHPSLPLLVPRETTTDVVDIEGYHVAAGTSVFVNVWAIQRDPKIWENPNQFIPERFMEENKSIIDFKGSDFELVPFGSGRRKCPGIGFGSAAYECVLANLLYWFDWKMVEDMKGETLDMTEEHGITVHKKFPLCLIPLPYN 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23585241 23587647 + MELO3C002310.2.1 Cme12g01649 344866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01649 527 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PANTHER CYTOCHROME P450 71B11-RELATED 27 525 - -
Cme12g01649 527 Pfam Cytochrome P450 52 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 Gene3D Cytochrome P450 40 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PRINTS E-class P450 group I signature 79 98 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PRINTS E-class P450 group I signature 103 124 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 SUPERFAMILY Cytochrome P450 52 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01649 527 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 27 525 - -
Cme12g01649 527 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 462 471 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01649 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101206899 932.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01990 Cme-Chr3:27686708 Cme12g01649 Cme-Chr12:23585241 1.27E-08 dispersed
Cme12g01647 Cme-Chr12:23570685 Cme12g01649 Cme-Chr12:23585241 1.86E-70 dispersed
Cme12g01649 Cme-Chr12:23585241 Cme12g01653 Cme-Chr12:23608166 0 dispersed
Cme12g01651 Cme-Chr12:23600793 Cme12g01649 Cme-Chr12:23585241 1.79E-70 dispersed
Cme12g01652 Cme-Chr12:23606378 Cme12g01649 Cme-Chr12:23585241 7.03E-31 dispersed
Cme12g01648 Cme-Chr12:23574628 Cme12g01649 Cme-Chr12:23585241 0 tandem
Cme12g01649 Cme-Chr12:23585241 Cme12g01650 Cme-Chr12:23599035 1.97E-120 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g851 . . . Bda15g00535 . . . . Cmo13g00794 Cmo18g00165 . . . . . . . Bhi02g00597 . . . . . . Cla06g01705 . . . . . . . . . . Lsi02g00426 Csa01g00905 Chy12g01223 Cme12g01649 Blo13g00153 Blo15g00247 . . Bpe07g00863 . . . . Cmo10g00092 . Cma13g00766 . . . . . . . . . . . . Cla03g00297 . . . . . . . . Chy02g02614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228