Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01658 ATGTCTCAGGATTTGCCATTGGATCAAGACCTGGATGAATCTGATCCCGAGTTTGTTGAGATTGATCCTACTGGTCGATATGGAAGGTATAAGGAAATTTTGGGCAAAGGGGCATTCAAAAGGGTATATCGAGCTTTTGATGAGTTGGAAGGAATCGAAGTAGCTTGGAATCAGGTTAAGGTGACAGATCTATTGCGAAACTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTTAAGACATTGAAGCACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACAAAAAATGAAAACATTAACTTCATTACTGAGATATTCACCTCTGGGACACTAAGGCAATATAGAAAGAAACACAAACATGTTGATCTGAGAGCATTGAAAAAGTGGTCGCGGCAGATATTAGAGGGCCTTTTGTATCTTCATAGTCACGACCCTCCAGTTATACATAGGGATTTAAAATGTGACAATATCTTTGTAAATGGAAACCAAGGTGAGGTAAAAATTGGTGACTTGGGACTTGCTGCCATTCTTCAACAAGCACGTTCAGCCCACAGTGTCATTGGGACACCCGAATTTATGGCTCCGGAGCTGTACGAGGAGGAATACAATGAGCTTGTGGATATTTATGCCTTTGGCATGTGTTTGCTTGAGCTTGTAACATTTGAATATCCATATGTTGAATGTGCAAATGCTGCTCAAATCTACAAGAAGGTCACATCAGGGATTAAACCAGCTTCGTTGGCAAAAGTCACTAATTTAGGAGTGAAAACATTTATAGAAAAATGTATCGCAAATGTCTCTGATCGCTTATCAGCAAAAGATCTTTTAAGGGATCCATTTCTTCAAGCAGATGATGATCATGATAGTATATCTCGTCATTTACAATCAAGCACTCGACATACAGTAAAAAGAGAGCAAATTGATACCGATCGGAGTATAGATTATTCTCCTGCTGAGACTAGTAGAGATTTCAGTATGCATGGCGAGAGAAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCGGATTCTATGGGTAATTTTCGCAATATCCATTTTCCATTTGATATTGAAGCCGACACAGCCATTTCTGTTGCCAGCGAAATGGTCGAGGAGTTGGATCTTTCTGATCAAGATGTCTCCACAATTTCCGAAATGATTGAAACGGAAATTCGATCTTACATTCCAGATTGGATATCGGTTGAGTATTCTGTAGATAATGTTGGAGCTGATGTTGCAATTTCTGATAGCTCTCCATCTGAAACAAGAAATGTTGCATCTCCGTTGTCTATTGAATCGGGTAACCTTGCATTAGAGGTAATGCCTTCAGGTCGCAAGTATTGGTCAGACTCTCCAAAAGGAATTGGTGGGTGTTCTCCTATTAAGCCAGGTCCTTCAAACTTGTCTTTTACCACAGATTTGAATGTTGAATCCTCTAACAGCCACGTACATGGGGACAATCTAGATCATGCTGCTATAATCAAGGGACTAGAAAATGAGCTTTTGTCAGAGGGTGGTGATCATGACGGGCAAGACGGGAGTAGCATTCATACTAGTTCTGAGACACATTATTCAGAAGAGAACAATTATGATGAATCAGTTGATCTCAAAATAGTAGCTGAGAAACTTGAAAATTTGTTGACACAACAACAAAAAGAATTAGATGAACTAAGGAAAAAACATAAATTGGCTATTTCAGAACTTTTGACTAAACTCACACCTGAATCCTATCAAAAAGTTATAAAGATGTGTCAGCTAAAGCGTCCTGATTTTGAGTTGGTTCTCTAA 1806 38.59 MSQDLPLDQDLDESDPEFVEIDPTGRYGRYKEILGKGAFKRVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECANAAQIYKKVTSGIKPASLAKVTNLGVKTFIEKCIANVSDRLSAKDLLRDPFLQADDDHDSISRHLQSSTRHTVKREQIDTDRSIDYSPAETSRDFSMHGERKDVNKIFLKLRIADSMGNFRNIHFPFDIEADTAISVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWISVEYSVDNVGADVAISDSSPSETRNVASPLSIESGNLALEVMPSGRKYWSDSPKGIGGCSPIKPGPSNLSFTTDLNVESSNSHVHGDNLDHAAIIKGLENELLSEGGDHDGQDGSSIHTSSETHYSEENNYDESVDLKIVAEKLENLLTQQQKELDELRKKHKLAISELLTKLTPESYQKVIKMCQLKRPDFELVL 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23634019 23638894 + MELO3C002302.2.1 Cme12g01658 344875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01658 601 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01658 601 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 594 - -
Cme12g01658 601 Coils Coil 539 573 - -
Cme12g01658 601 Gene3D - 339 410 - -
Cme12g01658 601 Gene3D Transferase(Phosphotransferase) domain 1 111 294 - -
Cme12g01658 601 SUPERFAMILY Protein kinase-like (PK-like) 30 311 IPR011009 -
Cme12g01658 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Cme12g01658 601 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 343 397 IPR024678 GO:0004674|GO:0005524
Cme12g01658 601 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Cme12g01658 601 MobiDBLite consensus disorder prediction 508 534 - -
Cme12g01658 601 CDD STKc_WNK 26 286 - -
Cme12g01658 601 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 8 594 - -
Cme12g01658 601 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01658 601 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01762 Cme-Chr5:26633620 Cme12g01658 Cme-Chr12:23634019 1.61E-167 dispersed
Cme08g02113 Cme-Chr8:26846230 Cme12g01658 Cme-Chr12:23634019 2.94E-145 dispersed
Cme09g01869 Cme-Chr9:22863296 Cme12g01658 Cme-Chr12:23634019 6.61E-145 dispersed
Cme11g00927 Cme-Chr11:12867198 Cme12g01658 Cme-Chr12:23634019 1.14E-119 dispersed
Cme12g01658 Cme-Chr12:23634019 Cme11g01446 Cme-Chr11:21379247 6.93E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65342 PF00069 Pkinase 9.80E-51 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01658 K08867 - csv:101206177 1145.95