Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01664 ATGAGGTTGTATGTTTATGTATTGGAGGCTAAGGACCTCCATGTGAAGGATTCGTTTGTGAAGCTTCGAGTTGGGAGGCGTAAGGCCAAGACGAGAATTATGAGGAATTGCTCTAATCCTGTTTGGAATGAGGAGTTTATTTTCAAGTTTCGTGATGTTAATGATGAACTAGTTGTGTCTGTTTATGAACACAGTGATGAATCTAATTTCTTTCATGCTTCATCGGGTTTGATTGGTCGTGTTCGGATACCTATACGGACTGTTACTGCTGAGGATTCACAGACCTTGCCTCCCACTTGGTTTGATCTGCGAAGGTCCAAAACTGAGAAATTTATCGATGAAGTTGCTGGGAAAGTGCTTCTTATTGTCTCATTACATGGAAAAGGCAACGTAATCAATCAATCAAGTGTTACTAATACTAATCCTAAACCTTTAGAAGACTCGTCTGCAAGTCCACAGGATTTGATTGGCGCCAAATCTTCATCCAACAAGGCTGTTAAATGGAAGCCTAACAAGAAAAGTATTGTGAGTCGTTTGGAGAGGTTGTTTCATAAGAGTGATGAGGACACAAGAACAGATAATTCTTCAGAGTTATCAAGTGCCACGTCAGATACTGAAGAGCGCATTAATGGGCATCTGTCTGAATCTAGCTTTGATGAAGCTATTGAGACGTTGCAGCTGAGGAGCAATGGAGAAGAAATGCCAGAAAATTTATCTGGCGGGGTTCTTGTGGATCAGGTGTATGTAGTTTCACCAGGTGATTTGAACAAGCTTCTCTTTTCGACAGGTTCACAGTTCAGGAGAGAACTAGCAGAGCATCAGGGAATAACAAATTTAGAAGAAGGAACTTGGTCTTGGAAACGAGGTGATGTACCTTGTCTTTCACGGATTGTATCTTACCGAAAACCTGCAACTAAGGTTGTTGGAGCTATTAATGCTACGGAGGAACAAACCTACATTAAAGGGGATGGATGGGAATTTGCTGTTTTGGTAAATGTAAATACACCTGAGGTACCATTTGGTAATGCATTCAATGTTGAGTTACTCTACAAGATAATGCCTGGCCCTGAGTTAATTTCTGGAGAAGAGACTTCCCATTTTGTAGTTTCTTGGGGTATAAACTTCCTCCATAGTACAATGATGAAAGGCATGATTGAGAAAGGGGCTCGTCAGGGGCTAGAGGAAAATTTTGTCCAATTCTCTAATTTGCTGGCTCAACATCTTAAAATTCCGAATTCTACTGAGTTATTGAACAAGGGTCATGTGTTGTCAGCTTTTGAGAATAACCGCCAATCAAATTTTGAATTAGCCCGCCAATACTTCTGGAATTTCACTGTATTTTCTACCTTGTTCGTCCTGCTATACGTACTTGTGCACATCATTCTTTCTAAGCGTAAAACAACGCAAGGCTTGGAGTTCATTGGAATGGATTTGCCAGATAGTTTAGGAGAACTTGTTACTAGTGGAATTTTAGTCCTTCAGTTGGAACGTGTTTATTACATGGTCTCACATTTCATTCAAGCTAGGTTAAAAAGAGGAGGTGACCATGGAGTCAAAGGCCAAGGAGATGGATGGATCCTAACCATAGTTCTTTTAGAAGGAGTGAACATTTCATCCTCGGATTCTGTTGGATCCTCAGACCCTTGTGTGGTTTTCACATGCAATGGTAAAAAAAGAACTAGCTCTGTTGAGCTTCAAACTCATGAGCCTCAGTGGAATGAGATACTGGAGTTTGATGCCATGAAGGAACCACCATCAGTATTATATGTGGAGGTTTTCGACTTTGATGGTCCATTTGACCAGGCTACTTCACTCGGGCATGCAGAGATTAATTTCCTAAAATATAAATCAAGTGAACTTGCAGATATATGGGTTCCCCTTGAGGGGAAGCTTGCTCAATCTTCTCAGTCGAAGCTACACTTGAGAATCTTCTTAGAAAATACTGATGGAATTGAAACAATAAGACAATACTTGTCTATGAAGGGAAAGGAGGTTGGTAAGAAGTTTTATGATCTTGTTCCTCTAACTCTAAGCTCGTCTAGTTACTTCAATGGTGGAATCTGGCTAACTTCTTCTCTGGTGCTTCTACAGCTGCATCCTAGGTCACCTTATAGGAACTCAACATTTCAAAAACTTTTCGGTTTGCCGGCAGAAGAGTTTCTTGTCAGCGACTTCACATGCTCCTTGAAAAGAAAAATGCTTCTTCAGGGGAGATTATTTGTATCTGCCAGAGTCATTGGGTTTTACGCCAATTTCTTCGGACAGAAAACAAAGTTTTTCTTTCTCTGGGAGGACATTGAAGATATAGAAGTACTGCACCCCTCCCTTTCCTCTCTAGGTAGCCCATCATTAGTCATAATACTTAAAAAAGGTCGAGGTCTTGAAGCAAGTCACGGTGCAAAGTCTCAAGATGAAGAGGGTAGACTCAGATTTTACCTCCAATCATTTGTCTCATTCAATGTAGCCAGCAGGACGATTATAGGTATGTGGAGAACAAGGACATCGACCCTTGATCAGAAAGCACAGGTTGCTGAAATGTCAAATGATTCCGAAGAAAGGTCAGTTTTGGTGGAGGATATGGAATGTTTTTTGGATGTAGAAGATACAAAGATGTCAAAGTTGTATGTTGCAGAACTTCCTATAAATGTGGGTGATTGGTATTATAATGTTCTTTGTAGAATCTATTGA 2688 40.48 MRLYVYVLEAKDLHVKDSFVKLRVGRRKAKTRIMRNCSNPVWNEEFIFKFRDVNDELVVSVYEHSDESNFFHASSGLIGRVRIPIRTVTAEDSQTLPPTWFDLRRSKTEKFIDEVAGKVLLIVSLHGKGNVINQSSVTNTNPKPLEDSSASPQDLIGAKSSSNKAVKWKPNKKSIVSRLERLFHKSDEDTRTDNSSELSSATSDTEERINGHLSESSFDEAIETLQLRSNGEEMPENLSGGVLVDQVYVVSPGDLNKLLFSTGSQFRRELAEHQGITNLEEGTWSWKRGDVPCLSRIVSYRKPATKVVGAINATEEQTYIKGDGWEFAVLVNVNTPEVPFGNAFNVELLYKIMPGPELISGEETSHFVVSWGINFLHSTMMKGMIEKGARQGLEENFVQFSNLLAQHLKIPNSTELLNKGHVLSAFENNRQSNFELARQYFWNFTVFSTLFVLLYVLVHIILSKRKTTQGLEFIGMDLPDSLGELVTSGILVLQLERVYYMVSHFIQARLKRGGDHGVKGQGDGWILTIVLLEGVNISSSDSVGSSDPCVVFTCNGKKRTSSVELQTHEPQWNEILEFDAMKEPPSVLYVEVFDFDGPFDQATSLGHAEINFLKYKSSELADIWVPLEGKLAQSSQSKLHLRIFLENTDGIETIRQYLSMKGKEVGKKFYDLVPLTLSSSSYFNGGIWLTSSLVLLQLHPRSPYRNSTFQKLFGLPAEEFLVSDFTCSLKRKMLLQGRLFVSARVIGFYANFFGQKTKFFFLWEDIEDIEVLHPSLSSLGSPSLVIILKKGRGLEASHGAKSQDEEGRLRFYLQSFVSFNVASRTIIGMWRTRTSTLDQKAQVAEMSNDSEERSVLVEDMECFLDVEDTKMSKLYVAELPINVGDWYYNVLCRIY 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23658277 23664463 - MELO3C002296.2.1 Cme12g01664 344881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01664 895 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 133 IPR035892 -
Cme12g01664 895 MobiDBLite consensus disorder prediction 186 215 - -
Cme12g01664 895 PANTHER BNAA05G37250D PROTEIN 1 883 IPR044511 -
Cme12g01664 895 MobiDBLite consensus disorder prediction 132 168 - -
Cme12g01664 895 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 1 883 - -
Cme12g01664 895 CDD C2 3 103 - -
Cme12g01664 895 Gene3D C2 domain 1 126 IPR035892 -
Cme12g01664 895 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 525 649 IPR035892 -
Cme12g01664 895 Pfam GRAM domain 708 779 IPR004182 -
Cme12g01664 895 ProSiteProfiles C2 domain profile. 512 625 IPR000008 -
Cme12g01664 895 Pfam C2 domain 2 103 IPR000008 -
Cme12g01664 895 Pfam C2 domain 525 627 IPR000008 -
Cme12g01664 895 Gene3D C2 domain 515 646 IPR035892 -
Cme12g01664 895 CDD C2 527 627 - -
Cme12g01664 895 MobiDBLite consensus disorder prediction 132 169 - -
Cme12g01664 895 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
Cme12g01664 895 ProSiteProfiles VASt domain profile. 239 412 IPR031968 -
Cme12g01664 895 SMART C2_3c 526 624 IPR000008 -
Cme12g01664 895 SMART C2_3c 2 97 IPR000008 -
Cme12g01664 895 Gene3D - 705 832 IPR011993 -
Cme12g01664 895 Pfam VAD1 Analog of StAR-related lipid transfer domain 243 392 IPR031968 -
Cme12g01664 895 SMART gram2001c 707 773 IPR004182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01664 - - - csv:101205709 1587.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g00796 Cme-Chr12:14441645 Cme12g01664 Cme-Chr12:23658277 0 dispersed
Cme12g01664 Cme-Chr12:23658277 Cme12g01877 Cme-Chr12:24957117 6.40E-07 dispersed
Cme12g01664 Cme-Chr12:23658277 Cme02g01738 Cme-Chr2:24364212 2.58E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012076 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 30