Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01670 | ATGGGATCAACAACAACAGGCAACCATTATTACAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGCAGGCTGTGTTTTTGCACCCTATTTTCCGCCCGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTTGGAGCGAGTAACGTGGCGAAGCTCTTGAACGAAGTTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGTTGGCCTACGAAGCTGAGGCAAGAATCAGAGATCCTGTTTATGGGTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAGGCTTCAAAAGGAACTTGATGCTGCTAAAGCTCGCCTTTTCCTCTACTCTTGCACTGATTTCTCAACTCCCTTTTTGCCTCAGTACCCTCAGATAATTAATACTCCTCATCATCCATTGATTTGGAATAGTAACTATAGTAATAATAATAACAATCATGATGATATTAATAATCCTTCTATGTATTTTAATGGAGGAATTTGA | 504 | 40.87 | MGSTTTGNHYYSPCAACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKARLFLYSCTDFSTPFLPQYPQIINTPHHPLIWNSNYSNNNNNHDDINNPSMYFNGGI | 167 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 23697413 | 23698099 | + | MELO3C002290.2.1 | Cme12g01670 | 344887 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01670 | 167 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 140 | - | - | |
Cme12g01670 | 167 | Coils | Coil | 92 | 112 | - | - | |
Cme12g01670 | 167 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - | |
Cme12g01670 | 167 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 110 | IPR004883 | - | |
Cme12g01670 | 167 | PANTHER | PROTEIN LATERAL ORGAN BOUNDARIES | 8 | 140 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme02g02002 | Cme12g01670 | CCT | |
Cme02g02002 | Cme12g01670 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme11g00229 | Cme-Chr11:2644836 | Cme12g01670 | Cme-Chr12:23697413 | 2.41E-49 | dispersed | |
Cme12g01670 | Cme-Chr12:23697413 | Cme11g01727 | Cme-Chr11:25352249 | 1.71E-45 | dispersed | |
Cme12g01670 | Cme-Chr12:23697413 | Cme02g02002 | Cme-Chr2:26262460 | 4.19E-67 | wgd | |
Cme12g01670 | Cme-Chr12:23697413 | Cme04g01850 | Cme-Chr4:26268072 | 9.63E-63 | wgd | |
Cme12g01670 | Cme-Chr12:23697413 | Cme09g00420 | Cme-Chr9:3984698 | 6.16E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42361 | PF03195 | LOB | 7.20E-42 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01670 | - | - | zju:107418298 | 212.231 |