Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01670 ATGGGATCAACAACAACAGGCAACCATTATTACAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGCAGGCTGTGTTTTTGCACCCTATTTTCCGCCCGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTTGGAGCGAGTAACGTGGCGAAGCTCTTGAACGAAGTTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGTTGGCCTACGAAGCTGAGGCAAGAATCAGAGATCCTGTTTATGGGTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAGGCTTCAAAAGGAACTTGATGCTGCTAAAGCTCGCCTTTTCCTCTACTCTTGCACTGATTTCTCAACTCCCTTTTTGCCTCAGTACCCTCAGATAATTAATACTCCTCATCATCCATTGATTTGGAATAGTAACTATAGTAATAATAATAACAATCATGATGATATTAATAATCCTTCTATGTATTTTAATGGAGGAATTTGA 504 40.87 MGSTTTGNHYYSPCAACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKARLFLYSCTDFSTPFLPQYPQIINTPHHPLIWNSNYSNNNNNHDDINNPSMYFNGGI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23697413 23698099 + MELO3C002290.2.1 Cme12g01670 344887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01670 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 140 - -
Cme12g01670 167 Coils Coil 92 112 - -
Cme12g01670 167 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cme12g01670 167 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Cme12g01670 167 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 8 140 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g02002 Cme12g01670 CCT
Cme02g02002 Cme12g01670 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00229 Cme-Chr11:2644836 Cme12g01670 Cme-Chr12:23697413 2.41E-49 dispersed
Cme12g01670 Cme-Chr12:23697413 Cme11g01727 Cme-Chr11:25352249 1.71E-45 dispersed
Cme12g01670 Cme-Chr12:23697413 Cme02g02002 Cme-Chr2:26262460 4.19E-67 wgd
Cme12g01670 Cme-Chr12:23697413 Cme04g01850 Cme-Chr4:26268072 9.63E-63 wgd
Cme12g01670 Cme-Chr12:23697413 Cme09g00420 Cme-Chr9:3984698 6.16E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42361 PF03195 LOB 7.20E-42 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01670 - - zju:107418298 212.231