Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01675 ATGCATGCAGAACAGAGGATACTGGTCTTCATAATATTTTTGCTTTTCTCCTTCTCTTTAATTGTTTCTGCTGTCAACCGTCAAGGCGAAGCTCTCCTATCATGGAAACAATCTCTGAACTTCTCGGCCCAAGAGTTAAACAATTGGGATTCCAATGATGAAACTCCCTGTGAGTGGTTTGGAATCATCTGCAACTTCAAACAGGAAGTTGTGGAAATAGAATTCAGGTACGCGGAATTGTGGGGTAACATCCCCACCAATTTTAGCTCATTGTTGACCCTGAACAAGCTCATCTTCGTGGGAACTAACATCACTGGTACAATTCCTAAAGAGATTGGCGATCTAAGGGAATTAAATACATTGGACCTGAGTGACAATGGCTTGACAGGAGAAATCCCAATTGAGATATGTGGTTTGCTCAAGCTTGAAAACGTCGACCTCAGCTCAAATAGACTTGAGGGCCTGATTCCAGCTGGAATTGGGAATCTCACGATCCTTAAAGAGCTTAGTCTACATGATAATCAATTTACCGGTCAAATTCCCAGAAGCATAGGAAACTTGAAGCAGCTAAAGAATATTAGAGCTGGTGGAAACAAAGACATCGAAGGCAATATACCTCCAGAAATTGGCAACTGTACCAATTTGGTGTATGCAGGCTTTGCTGAAACCAGAATTTCAGGCTCTCTGCCACCAAGTTTAGGCCTACTCAAGAAGCTCAAAACACTCGCATTGTACACAACCTTTCTCTCTGGCCAAATTCCTCCTGAAATTGGAAACTGCAGTGAGCTCCAATACTTGTATCTTTATGAAACGTTGCTCGCAGGTTCTATTCCAACAAGTTTTGGGAATCTCCAGAACCTGCTAAATCTGTTTCTATATAGAAATAGATTAACAGGCCCGTTGCCAAAGGAGCTTGGAAATTGTTATCAATTATTCGACATCGACATTTCAATGAATTCTTTGACGGGAAATATTCCAACCACATTTGGTAACTTGACTTTGCTACAAGAACTGAATTTGGGAATGAATAATATTTCAGGCCAGATACCAGCCGAGATTCAAAATTGGACGGAACTTACTCATTTGATGCTTGACAACAATCAAATCACGGGTTTGATACCTTCAGAACTAGGGACTTTGAAAAATCTGAGAATGTTGTTCTTGTGGCATAACAAGCTTGAAGGAAATATTCCATCTTCAATTTCCAACTGTGAGATGCTTGAAGAGATGGATTTATCGATAAATGGCTTGACAGGTCACATTCCTGGACAAATTTTCCACCTCAAGAAGCTAAATAGCCTCATGCTCCTCTCCAACAATCTATCAGGCGTTATACCTACAGAGATCGGAAATTGCTTGTCGTTAAATCGTTTCAGAGTTAGCAAAAACTTGCTCTTCGGCGCTCTCCCACCTCAGTTTGGGAATTTGAAGAATCTGAGTTTCTTGGACCTTGGAGAGAACCAGTTCTCTGGAGTAATACCTGAAGAGATTTCCGGCTGCACGAATCTAACATTCATCGATTTACACTCCAACACCATTAGTGGAGCTTTACCCTCAGGTCTCCACCGACTTATTTCCCTTCAAATCATTGACTTCTCAAATAATGTAATTGAAGGGAACATAGATCCTGGCCTCGGACTGTTAAGCTCATTGACAAAACTCATTCTGTTCAACAATCGATTCTCCGGGCCAATCCCTAGCGAGCTGGGCGCTTGCTTGAGGTTACAGTTATTGGACCTCAGTGTTAATCAACTTTCCGGTTATCTTCCGGCAGAGCTAGGGGAAATTCCAGCGCTGGAAATCGCTCTAAACCTGAGTTGGAACCAACTTAACGGTGAGATACCGAAGGAGTTCGCCTATTTAGACAGACTCGGAATCTTAGATCTCTCACACAATCACCTCAGCGGCGACCTCCAAACCATCGCCGTAATGCAGAATCTAGTAGTACTCAACATCTCCGACAACAATTTCTCTGGCCGAGTGCCGGTGACGCCCTTCTTCCAGAAACTCCCTCCCAGTGTCCTATCCGGTAATCCGAACCTCGGCTTCGGCACCCAATGCACCGACGAAAAGGGAAGCAGAAATTCAGCACATGAATCAGCGTCTCGTGTGGCGGTGGTGCTGCTGCTATGCATAGCTTGGACGCTTCTCATGGCGGCTCTTTACGTGACCTTTCGATCGAAAAGAATGGCCCGAAGACGCTACTATGGTGGGCACGATGACGACGGCGTCGATAGCGACATGGAGATTGGCAACGAACTAGAATGGGAGATGACGCTCTATCAGAAGCTCGACCTTTCAATTTCTGACGTGGCAAAGAAACTGACAGCTGCCAATATCCTCGGTCGTGGCCGATCGGGCGTCGTTTACCAGGTCAACATCGCTCCGGGTTTAACCATCGCCGTCAAACGGTTCAAGACATCGGAGAAATTCGCCGCCGCCGCATTCTCTTCCGAAATCTCAACTCTAGCCAGTATCCGACACCGGAATATCATACGATTGCTCGGTTGGGCGGTCAATCGTAAAACGAAATTGTTATTCTATGACTACTGGCCACAAGAAAACCTCGGCGGTTTGTTACACGAGTGCAGCGCCGGCGGGTACGTAATCGGCTGGAATGCTCGGTTCAAGATCGCGACGGGATTGGCGGACGGATTGGCTTACTTGCATCACGACTGCGTGCCGGCGATTTCGCACCGGGACGTGAAAGTCCAAAATATACTATTGAGCGACGAATACGACGCGTGCCTTACAGATTTTGGATTCGCAAGGTTCACTGAAGACAATCTAAACGAATCATCGTCGGCAAATCCGCTATTCGTCGGATCTTACGGTTACATCGCACCGGAGTATGGTCATATGCTGAAAGTAACAGAGAAGAGCGATGTGTATAGCTACGGAATCGTTCTCTTAGAGATGATTACTGGTAAAAAGCCAGCGGATCCTTCATTTCCAGAAGGCCAACACATAATCCAATGGGTTCAAAATCATCTACGCAGCCAGAACGATCCAATCGAGCTATTGGATCCAAAACTCAAAATCCATCCCAACGCCGAAATTCATGAAATGCTTCAAGTCCTCGAAATCGCTCTTCTATGCACCAATCATCGCGCCGACGATCGGCCTATGATGAAGGACGTCGCTGCATTATTGAGAAGAATTCAAACAGAGTCTACGATGATGAGGATCAAGGGAATCAAACCTGTTTATAGATTGAAGAGACTCGAAATTCAATCGTATTAA 3243 45.11 MHAEQRILVFIIFLLFSFSLIVSAVNRQGEALLSWKQSLNFSAQELNNWDSNDETPCEWFGIICNFKQEVVEIEFRYAELWGNIPTNFSSLLTLNKLIFVGTNITGTIPKEIGDLRELNTLDLSDNGLTGEIPIEICGLLKLENVDLSSNRLEGLIPAGIGNLTILKELSLHDNQFTGQIPRSIGNLKQLKNIRAGGNKDIEGNIPPEIGNCTNLVYAGFAETRISGSLPPSLGLLKKLKTLALYTTFLSGQIPPEIGNCSELQYLYLYETLLAGSIPTSFGNLQNLLNLFLYRNRLTGPLPKELGNCYQLFDIDISMNSLTGNIPTTFGNLTLLQELNLGMNNISGQIPAEIQNWTELTHLMLDNNQITGLIPSELGTLKNLRMLFLWHNKLEGNIPSSISNCEMLEEMDLSINGLTGHIPGQIFHLKKLNSLMLLSNNLSGVIPTEIGNCLSLNRFRVSKNLLFGALPPQFGNLKNLSFLDLGENQFSGVIPEEISGCTNLTFIDLHSNTISGALPSGLHRLISLQIIDFSNNVIEGNIDPGLGLLSSLTKLILFNNRFSGPIPSELGACLRLQLLDLSVNQLSGYLPAELGEIPALEIALNLSWNQLNGEIPKEFAYLDRLGILDLSHNHLSGDLQTIAVMQNLVVLNISDNNFSGRVPVTPFFQKLPPSVLSGNPNLGFGTQCTDEKGSRNSAHESASRVAVVLLLCIAWTLLMAALYVTFRSKRMARRRYYGGHDDDGVDSDMEIGNELEWEMTLYQKLDLSISDVAKKLTAANILGRGRSGVVYQVNIAPGLTIAVKRFKTSEKFAAAAFSSEISTLASIRHRNIIRLLGWAVNRKTKLLFYDYWPQENLGGLLHECSAGGYVIGWNARFKIATGLADGLAYLHHDCVPAISHRDVKVQNILLSDEYDACLTDFGFARFTEDNLNESSSANPLFVGSYGYIAPEYGHMLKVTEKSDVYSYGIVLLEMITGKKPADPSFPEGQHIIQWVQNHLRSQNDPIELLDPKLKIHPNAEIHEMLQVLEIALLCTNHRADDRPMMKDVAALLRRIQTESTMMRIKGIKPVYRLKRLEIQSY 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23718919 23722412 + MELO3C002286.2.1 Cme12g01675 344892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01675 1080 Gene3D Ribonuclease Inhibitor 24 197 IPR032675 -
Cme12g01675 1080 SMART serkin_6 775 1032 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01675 1080 PANTHER OS01G0170300 PROTEIN 8 1062 - -
Cme12g01675 1080 SUPERFAMILY Protein kinase-like (PK-like) 757 1051 IPR011009 -
Cme12g01675 1080 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cme12g01675 1080 Gene3D Ribonuclease Inhibitor 262 425 IPR032675 -
Cme12g01675 1080 PRINTS Leucine-rich repeat signature 142 155 - -
Cme12g01675 1080 PRINTS Leucine-rich repeat signature 621 634 - -
Cme12g01675 1080 SUPERFAMILY RNI-like 325 666 - -
Cme12g01675 1080 SUPERFAMILY RNI-like 73 394 - -
Cme12g01675 1080 ProSiteProfiles Protein kinase domain profile. 775 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01675 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Cme12g01675 1080 Gene3D Ribonuclease Inhibitor 426 696 IPR032675 -
Cme12g01675 1080 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Cme12g01675 1080 Pfam Protein kinase domain 779 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01675 1080 Gene3D Phosphorylase Kinase; domain 1 749 850 - -
Cme12g01675 1080 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 1062 - -
Cme12g01675 1080 SMART LRR_typ_2 115 139 IPR003591 -
Cme12g01675 1080 SMART LRR_typ_2 332 355 IPR003591 -
Cme12g01675 1080 SMART LRR_typ_2 476 500 IPR003591 -
Cme12g01675 1080 SMART LRR_typ_2 356 379 IPR003591 -
Cme12g01675 1080 SMART LRR_typ_2 380 404 IPR003591 -
Cme12g01675 1080 SMART LRR_typ_2 284 308 IPR003591 -
Cme12g01675 1080 SMART LRR_typ_2 428 452 IPR003591 -
Cme12g01675 1080 SMART LRR_typ_2 548 572 IPR003591 -
Cme12g01675 1080 SMART LRR_typ_2 163 187 IPR003591 -
Cme12g01675 1080 SMART LRR_typ_2 644 677 IPR003591 -
Cme12g01675 1080 Pfam Leucine rich repeat 358 417 IPR001611 GO:0005515
Cme12g01675 1080 Pfam Leucine rich repeat 141 199 IPR001611 GO:0005515
Cme12g01675 1080 Pfam Leucine rich repeat 455 513 IPR001611 GO:0005515
Cme12g01675 1080 Gene3D Transferase(Phosphotransferase) domain 1 852 1068 - -
Cme12g01675 1080 Gene3D Ribonuclease Inhibitor 198 261 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01993 Cme12g01675 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01080 Cme-Chr1:13500665 Cme12g01675 Cme-Chr12:23718919 0 dispersed
Cme06g00412 Cme-Chr6:2644766 Cme12g01675 Cme-Chr12:23718919 0 dispersed
Cme12g01675 Cme-Chr12:23718919 Cme02g01993 Cme-Chr2:26187599 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65343 PF00069 Pkinase 6.60E-37 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01675 - - csv:101205934 1979.91