Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01678 ATGATTGAGAGAGGAGAGAGAAAGAGAGATCTTGGGCTTATTGGGCTTATTGGGCTTATTCGAAATGGGCCTTGCCATGGTCTATACGGCCCAAATGATGCTCTTGAATGGTTGCTCCGAATGAAATTCAACAACCAATTCGGGAACAACAGGGAGAGAGAAAGAGGTCCCAGAACGAACAGGGATCGAAGCAGAATGGTGAATCCGAAATTATCAATCTTTCTTCTCAATCTCTGGTGTTTTCTCAGTCTTTACATCGCCATCGAATCACCCCAATACGCTGTTGTTCATTCAGAATCAGACTTCGAAATCAGATTTTACAGAAAGTCCACTTGGATCTCTGCTCCCGTCCAAAACCCATCCTTCGAGAAAGCTACAAAAAATGGTTTCCACAGACTGTTCCAGTATATACAAGGTGCCAATCTGAATTGGTCAAGGATTGCCATGACTGCTCCTGTCTTGACCAGCATTGTCCCTGGGGCTGGCCCTCTTCACTCTTCCTCTTATCTTGTTCAATTCTATCTGCCACTTAAGTTCCAAGCTTCACCCCCTCTTCCTCTTCCTGAACTGAAATTGAAGCCCTGTGATTGGGAAGCTCATTGTGTTGCAGTTAGGAAGTTCTCTGGATTTGCAAGGGACGAGAAGGTGATAAAGGAAGCAGAGAAACTTGCCACCAGCTTGAGTAGGTTCCCTTTGGCGAATTCCACCTCTGAGAGGGGTTATGCATATGCCATTGCCCAGTACGACTCTCCCTTCCGGTTGATTGGACGAGTAAATGAAGTCTGGGTCGATGTTGATGCAGCTGATTTGGAGGGATGTAAATCTAGTGCCATTGCTGCATTTTAA 846 45.63 MIERGERKRDLGLIGLIGLIRNGPCHGLYGPNDALEWLLRMKFNNQFGNNRERERGPRTNRDRSRMVNPKLSIFLLNLWCFLSLYIAIESPQYAVVHSESDFEIRFYRKSTWISAPVQNPSFEKATKNGFHRLFQYIQGANLNWSRIAMTAPVLTSIVPGAGPLHSSSYLVQFYLPLKFQASPPLPLPELKLKPCDWEAHCVAVRKFSGFARDEKVIKEAEKLATSLSRFPLANSTSERGYAYAIAQYDSPFRLIGRVNEVWVDVDAADLEGCKSSAIAAF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23740870 23742172 + MELO3C002283.2.1 Cme12g01678 344895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01678 281 Pfam SOUL heme-binding protein 88 263 IPR006917 -
Cme12g01678 281 SUPERFAMILY Probable bacterial effector-binding domain 78 265 IPR011256 -
Cme12g01678 281 Gene3D Regulatory factor, effector binding domain 87 272 IPR011256 -
Cme12g01678 281 PANTHER SOUL HEME-BINDING PROTEIN-RELATED 74 274 - -
Cme12g01678 281 PANTHER HEME-BINDING PROTEIN-RELATED 74 274 IPR006917 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01678 - - - cmo:103483699 555.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02680 Cme-Chr4:32381484 Cme12g01678 Cme-Chr12:23740870 2.81E-16 transposed
Cme07g01403 Cme-Chr7:19616469 Cme12g01678 Cme-Chr12:23740870 1.39E-34 transposed
Cme10g00549 Cme-Chr10:3508452 Cme12g01678 Cme-Chr12:23740870 1.17E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g784 . . Bda06g00608 . . . . . Cmo13g00907 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00390 Csa01g00868 Chy12g01254 Cme12g01678 . . . . Bpe07g00849 . . . Sed01g1635 . . Cma13g00874 . Car13g00716 . . . Bhi08g01640 Tan05g1989 Cmetu12g1788 Lac10g0470 . . . Cla01g01314 . . Cco01g1476 Clacu01g1380 Cmu01g1290 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014295 1 1 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 1 0 1 1 1 0 1 1 1 0 1 1 1 22