Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01691 TGCTTCTTCCTTCACCAACCTTTTCTCCTCGGCGGACGCTCCGAGGTCTTTCTCTTTTGCTTCGTCCTCTTCTCCGATCTCAGATCTCGAGCTCAATCCTTCGAAATGCAGAGCTCTGCGTTCACCTTCTCCTCTTCTCTTCCTCTTCTCAAGCCTCGCCGGCCTCATACTTCCTCCTTCACCTCTCCTTCTAACTCAATTCGGTTATCTTCTTCGTCTTCCACAAATTCCAGAGATCTTGGAGACCTCAACAATGTTGGCATCGCTTCCTCTTGGCCTCGCCGATCTTGGACTCTCTCTTCATCTCCTTTTTCGTCATCCAAACTCCGGCCATGGAGTGGTGTACCCTCTCTTGCTTCGGATTCCGATGCGAGTCATTTCAAGGTTCAGGCTACTGCGGTGCCGGATAGCTCAGGAGAGGCTGCGAGTGCTGGCGGAAGCTTTATGAAAACGTTGGAGCTCGGGTTGTTGTTTGGCCTATGGTACCTTTTCAACATCTACTTTAACATCTATAATAAGCAGGTTCTCAAAGTGTATCCATTCCCTGTAACTGTCACCGGAGTTCAATTTGCTGTGGGCAGTGTACTTGTTCTCCTCATGTGGGGACTTAATCTCTACAAAAGACCAAAGATTAGTGGTGCTCAGCTTGCTGCCATTCTGCCGTTGGCAATTGTTCACACATTGGGAAATCTTTTCACAAATATGAGTCTTGGGAAAGTGGCAGTATCGTTCACTCACACAATCAAAGCCATGGAGCCATTTTTTTCAGTTATCCTGTCAGCAATGTTTCTTGGAGAGACTCCTACTCCCTGGGTCGTTTTATCCCTTCTGCCAATCGTTGGTGGTGTCGCATTGGCATCTGCCACTGAGGCCTCCTTCAACTGGGCTGGGTTTTGGAGCGCAATGGCGTCTAATGTGACTAATCAATCTCGTAATGTTCTTAGCAAAAAGGTCATGGTGAAAAAAGAGGAGTCGATGGACAACATCACCCTCTTTTCAATTATAACAGTCATGTCCTTTTTCTTACTATCCCCTGTGGCCATCTTCATGGAAGGTGTCAAGTTCACTCCTGCATACATTCAATCAGCTGGATTGAACATGAATCAACTATACACTAGGTCTCTTCTAGCTGCCCTTTGTTTCCATGCTTACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCGCCCGTTACCCACTCGGTAGGCAATTGTGTAAAGCGTGTTGTGGTCATCGTGAGCTCCGTTATCTTCTTCCAAACACCTGTTTCTCCAATCAACTCTATTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTCTATTCGAGGGTTAAGCGCATCAAAGCTAAGCCGAAGACTGCTTAA 1365 46.74 CFFLHQPFLLGGRSEVFLFCFVLFSDLRSRAQSFEMQSSAFTFSSSLPLLKPRRPHTSSFTSPSNSIRLSSSSSTNSRDLGDLNNVGIASSWPRRSWTLSSSPFSSSKLRPWSGVPSLASDSDASHFKVQATAVPDSSGEAASAGGSFMKTLELGLLFGLWYLFNIYFNIYNKQVLKVYPFPVTVTGVQFAVGSVLVLLMWGLNLYKRPKISGAQLAAILPLAIVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGETPTPWVVLSLLPIVGGVALASATEASFNWAGFWSAMASNVTNQSRNVLSKKVMVKKEESMDNITLFSIITVMSFFLLSPVAIFMEGVKFTPAYIQSAGLNMNQLYTRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSIGTGIALAGVFLYSRVKRIKAKPKTA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23801716 23805247 + MELO3C002270.2.1 Cme12g01691 344908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01691 454 SUPERFAMILY Multidrug resistance efflux transporter EmrE 196 287 - -
Cme12g01691 454 Pfam Triose-phosphate Transporter family 153 442 IPR004853 -
Cme12g01691 454 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 152 452 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cme12g01691 454 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 90 429 - -
Cme12g01691 454 MobiDBLite consensus disorder prediction 54 78 - -
Cme12g01691 454 PANTHER SOLUTE CARRIER FAMILY 35 90 429 - -
Cme12g01691 454 SUPERFAMILY Multidrug resistance efflux transporter EmrE 366 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01691 Cme-Chr12:23801716 Cme07g00856 Cme-Chr7:8494615 4.91E-19 dispersed
Cme04g00848 Cme-Chr4:10777167 Cme12g01691 Cme-Chr12:23801716 1.24E-67 transposed
Cme06g00288 Cme-Chr6:1759389 Cme12g01691 Cme-Chr12:23801716 6.96E-72 transposed
Cme06g02272 Cme-Chr6:29779107 Cme12g01691 Cme-Chr12:23801716 2.25E-69 transposed
Cme08g00272 Cme-Chr8:1752317 Cme12g01691 Cme-Chr12:23801716 4.31E-63 transposed
Cme10g00361 Cme-Chr10:2327877 Cme12g01691 Cme-Chr12:23801716 4.43E-59 transposed
Cme12g01691 Cme-Chr12:23801716 Cme09g00397 Cme-Chr9:3569311 1.52E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01691 K15283 - csv:101203848 751.125