Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01694 ATGGCTAGTCCTGGGAAAAACCTACATCCTGAACTTTGTGGTTTAAAGGGATCGAATCAGGAACCTGATGATAAAAACCAGCTTGTTGACAAAGAAGCTGGGCTGAGTGGTGGTGAGAGGGATATGGCTCCGGTTACCGGGAATTCCATTCACAGGTCAGGTTCTCGTCCACAGCTAGACCTTAGCAAAGCAGAAATCCAGGGAAATTTTGAGGAGAGAGATCCCACGATTCTGTTGCCTAACCAATCTGATGATATATCTCACCTGGCTCTTGACATCGGCGGATCTCTCATCAAATTGGTGTACTTTTCTAGACATGAAGATCAATCGGTTGATGATAAGAGAAAGAGAAGCATTAAGCAGAGACTGGGATTATCAAATGGTAATAGAAGAAGTTATCCAGTTCTTGGCGGGAGGCTTCATTTTGTGAAGTTTGAGACAAGCAAGATCAACGAGTGTTTAGACTTCATCCATTCCAAGCAGCTACATCGTGGTGCTTGCAATGATTTACCTCATTGGCATTCAGATGACCCAGCAAACGAAAATGCCATCATTAAGGCTACAGGTGGAGGGGCATACAAGTTCGCAGATCTTTTTAAAGAAAGACTTGGAGTTAGCATTGAAAAAGAAGATGAGATGGATTGTCTTGTGGCTGGAGCAAACTTTCTACTAAAGGCAATACGTCATGAAGCTTTCACTCATATGGAGGGTAAAAAAGAGTTTGTGCAACTTGACCACAACGAATTGTTTCCTTATCTGCTTGTTAACATTGGATCTGGCGTCAGTATGATCAAGATTGGTCTCTCTGCGTCAACAATTGCATCAAGTTTTGGCAAGACCATCTCAGTGAACAAGGAGCTTGAGGATTACAGACCAGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCATATAACATTGGACAGATTTCGTACTTGAATGCTCTACGGTTTGGGCTTAAGAGAATATTTTTTGGAGGATTCTTTATCAGGGGACATGCCTATACCATGGATACAATTTCCTTCGCAGTTCACTTCTGGTCAAAAGGAGAAGCACAAGCGATGTTCTTGCGTCATGAGGGGTTCTTAGGAGCCTTAGGTGCATTCATGAGCTATGAAAAGCATGGTCTTGATGATCTATTGGCCCATCAGTTAGTTGAAAGGTTTCCAATGGGTGCACCATACACGGGAGGGAAAGTTCATGGGCCTCCACTTGGTGATTTGAATGAGAAGATTTCTTGGATGGAGAAATTCTTGCAGAAGAGAACAGAAATTACTGCACCTGTCCCTACGGCTCCCCCTGGAACTACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGAAACCTTGCGATCTGATGCAAGTGCCTTAAATGTTGGTGTACTCCATCTGGTTCCCACTTTGGAGGTGTTTCCACTGTTAGCTGATCCAAAGACATATGAGCCCAACACAATTGATCTCTCTGATCACAGTGAGTTGGAGTACTGGTTCACCGTGCTTTCAGAGCATGTACCGGACCTTGTTGATAAGGCTGTTGCAAGCGAAGGAGGGACTGATGATGCCAAGAGAAGGGGTGATGCATTTGCTCGGGCATTTTCTGCCCACTTGAGGAGGTTGATGGAGGAACCTACGGCATATGGAAAGTTGGGTTTGGCTAATCTTCTGGAACTGAGGGAAGAGTGCTTGAGGGAATTCCAATTTTTTGATGCCTATAGAAGCATAAAGCAGAGGGAAAATGAGGCATCACTTGCCGTATTGCCTGACCTGCTGTTGGAACTTGATAGTATGAATGAGGAAGCAAGACTGCTTACCCTAATCGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGTTCTCGTGCTTGTGTTGATCTTTATCACAAGGGGACAATAATTGAGATTTACAGAATGAGTCGCAATAAGATGCAGAGGCCATGGCGGGTCGACGATTTTGATGCCTTCAGAGAGAGAATGTTAGGGTCTGGGGATGAGAGACCCCTTCCACACAAAAGAGCTCTTCTCTTTGTGGACAACTCAGGTGCTGATGTTGTTCTAGGGATGCTTCCCTTGGCAAGGGAACTCCTCCGACGAGGAACAGAAGTTGTTTTAGTTGCAAACTCCCTTCCTGCCCTAAATGATGTAACCGCAATGGAGCTTCCTGACATTGTAGCTGAGGCTGCCAAGCACTGTGACATACTTCGTAGAGCTGCTGAAGCAGGGGGATTGATTGTGGATGCCATGATCGACTCTGCAGACGGTTCTAAAGAGGGATCATCTTTTGTTCCCTTGATGGTTGTTGAAAATGGGTGTGGTAGTCCATGTATAGATTTAAGACAAGTCAGCTCTGAGTTGGCTGCTGCAGCGAAAGACGCTGATTTGGTAATCTTGGAAGGGATGGGGAGAGCTCTTCACACAAACTTCAATGCCCAATTTAAATGTGATGCTTTGAAGCTTGCCATGGTGAAAAATCAGAGGCTGGCAGAAAAATTGATCAAAGGAAACATATATGACTGTGTTTGCAGATATGAACCATCACATTGA 2547 44.52 MASPGKNLHPELCGLKGSNQEPDDKNQLVDKEAGLSGGERDMAPVTGNSIHRSGSRPQLDLSKAEIQGNFEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVDDKRKRSIKQRLGLSNGNRRSYPVLGGRLHFVKFETSKINECLDFIHSKQLHRGACNDLPHWHSDDPANENAIIKATGGGAYKFADLFKERLGVSIEKEDEMDCLVAGANFLLKAIRHEAFTHMEGKKEFVQLDHNELFPYLLVNIGSGVSMIKIGLSASTIASSFGKTISVNKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLLAHQLVERFPMGAPYTGGKVHGPPLGDLNEKISWMEKFLQKRTEITAPVPTAPPGTTGLGGFEVPLSKGETLRSDASALNVGVLHLVPTLEVFPLLADPKTYEPNTIDLSDHSELEYWFTVLSEHVPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRSIKQRENEASLAVLPDLLLELDSMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDAFRERMLGSGDERPLPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLIVDAMIDSADGSKEGSSFVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVILEGMGRALHTNFNAQFKCDALKLAMVKNQRLAEKLIKGNIYDCVCRYEPSH 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23827947 23840369 + MELO3C002267.2.1 Cme12g01694 344911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01694 848 PANTHER PANTOTHENATE KINASE 2 32 266 - -
Cme12g01694 848 PANTHER PANTOTHENATE KINASE 2 265 769 - -
Cme12g01694 848 Pfam Fumble 88 266 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cme12g01694 848 Gene3D - 80 243 - -
Cme12g01694 848 SUPERFAMILY Actin-like ATPase domain 202 372 IPR043129 -
Cme12g01694 848 MobiDBLite consensus disorder prediction 1 60 - -
Cme12g01694 848 SUPERFAMILY AF1104-like 463 846 IPR036075 -
Cme12g01694 848 PIRSF PanK_long 263 848 IPR015844 GO:0004594|GO:0015937
Cme12g01694 848 PIRSF PanK_long 42 267 IPR015844 GO:0004594|GO:0015937
Cme12g01694 848 Gene3D - 485 569 IPR035073 -
Cme12g01694 848 Gene3D - 265 352 - -
Cme12g01694 848 Pfam Damage-control phosphatase ARMT1-like domain 555 834 IPR002791 -
Cme12g01694 848 MobiDBLite consensus disorder prediction 23 37 - -
Cme12g01694 848 PANTHER PANTOTHENATE KINASE 32 266 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cme12g01694 848 PANTHER PANTOTHENATE KINASE 265 769 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cme12g01694 848 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 649 846 - -
Cme12g01694 848 SUPERFAMILY Actin-like ATPase domain 86 230 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01694 K24265 PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein - oeu:111385028 1214.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01917 Cme-Chr1:27573956 Cme12g01694 Cme-Chr12:23827947 1.70E-60 transposed
Cme10g00526 Cme-Chr10:3382556 Cme12g01694 Cme-Chr12:23827947 2.98E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39