Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01696 ATGGGTCTTACTTCTCTTCAAGTTTGCATGGACTCTTCTGATTGGCTTCAGGGTACAATGAACGAGGAGTCAGGGATGGATTCTTCGTCGTTATCGGGAGATATGCTATCATGTTCAAGGCCATTAACAGAGAGGAGATTAAGGCCACAACATGATCAAGCTTTGAAATGCCCAAGATGTGATTCAACTCATACCAAGTTTTGCTACTACAACAATTACAGTCTCTCTCAACCTCGTTACTTTTGCAAAACTTGTAGAAGGTATTGGACTAAAGGTGGAACTTTAAGAAACATTCCTGTTGGTGGTGGTTGTAGAAAGAACAAAAAAGTTTCCACTACAAAAAAATCCAATGATTCACAACAACAACAACAACAACCACAAATTCAACAACCCATTTCTCAAAATCATCATCTTCTTCATGGCCCTTCTTCATCTTCATCTTCTTCACTTCATCACATTCATAATCCCACTGATCTTCATCTCTCATTTCCAGATCAAATTCAATTCCCACATTTCAATCCTCTCACTCCAAATTTCACCATTGGAATGCTTGAAACTCATCATCATCATCATCATCAACAAACTCGTCCCATCGACTTCATGGACACAAAAATGGAAGCCATTGTTGGAAATAATGGTCATCATTACACTACAAACACCGATCATTTAGCCATGGTTGGTGGGTTAACTAGTGATCATCATATTACAGCTGCTGCTGCTGCTGCTGCTGCAACAAATTTCCATGGAATTTGCTCTCCTTATGGACTTTCACTTGATGGGAATAATATCAATCAAATGATGATTCCTTATGATCAACATCAACAAAATGAAGATCCAAATGGAATGGATGTTAAACCAAATACAAAGCTTTTGGCTTTGGAATGGCAAGATCAAGGAGGATGTTCAGAGAAAGTTGAATCTTATGGATATATAAATGGAATTGGGTCTTCATGGAATGGGATGATGAATGGATATGGACCATCAACAACCAACCCATTGGTGTAA 1005 38.41 MGLTSLQVCMDSSDWLQGTMNEESGMDSSSLSGDMLSCSRPLTERRLRPQHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTTKKSNDSQQQQQQPQIQQPISQNHHLLHGPSSSSSSSLHHIHNPTDLHLSFPDQIQFPHFNPLTPNFTIGMLETHHHHHHQQTRPIDFMDTKMEAIVGNNGHHYTTNTDHLAMVGGLTSDHHITAAAAAAAATNFHGICSPYGLSLDGNNINQMMIPYDQHQQNEDPNGMDVKPNTKLLALEWQDQGGCSEKVESYGYINGIGSSWNGMMNGYGPSTTNPLV 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23849030 23850913 - MELO3C002264.2.1 Cme12g01696 344913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01696 334 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Cme12g01696 334 MobiDBLite consensus disorder prediction 114 130 - -
Cme12g01696 334 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 15 326 - -
Cme12g01696 334 MobiDBLite consensus disorder prediction 100 130 - -
Cme12g01696 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 326 IPR045174 GO:0003700|GO:0006355
Cme12g01696 334 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
Cme12g01696 334 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01804 Cme12g01696 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01804 Cme-Chr2:24832269 Cme12g01696 Cme-Chr12:23849030 5.30E-35 dispersed
Cme08g00320 Cme-Chr8:2027728 Cme12g01696 Cme-Chr12:23849030 6.37E-33 dispersed
Cme12g00341 Cme-Chr12:4721746 Cme12g01696 Cme-Chr12:23849030 4.22E-40 dispersed
Cme12g01696 Cme-Chr12:23849030 Cme06g00082 Cme-Chr6:526322 5.89E-32 dispersed
Cme12g01696 Cme-Chr12:23849030 Cme11g01764 Cme-Chr11:25878348 5.49E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42362 PF02701 zf-Dof 1.80E-33 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01696 - - cmo:103483519 653.284