Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01699 ATGCTAGCTTCTTCCTTCATCCTGCAGTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATTATCACGGAGTATATGACAGGTGGTTCGTTAAGAAAATATCTCCATCAACAGGAGCCACATTCTGTTCCGCTGAACTTGGTTTTGAAACTAGCTCTCGACATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTTCACAGAGACCTTAAATCAGAAAATCTCTTACTCGGTGAAGATATGTGTGTTAAGGTAGCAGATTTTGGTATCTCGTGCTTAGAATCTCAATGCGGAAGTGCGAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACAAAGAAAGTTGATGTCTATAGCTTTGGCATCGTCTTGTGGGAGCTCTTAACTGCATTGACACCATTTGATAACTTGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCTCTGCCTTCCGCGTGCCCGCAGGCATTTCGTCATCTGATTAAGAGATGCTGGTCGAGAAATCCCGACAAGCGACCTCATTTTGATGAGATCGTTTCAGTTTTGGAAACTTATGTGGAGTCTTACAATGAAGATCCAGAATTTTTTTGTCATTATGTCCCCTCATCATCTAGCAGATGCACTGCTTGGAGATGCTTACCAAAATGTATTACCAAACAATCATCTGCTACCTTGAAGCCTAGGAATTCTTCATCCTCTTGA 756 43.39 MLASSFILQFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALDISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNLTPEQAAFAVCQKNARPPLPSACPQAFRHLIKRCWSRNPDKRPHFDEIVSVLETYVESYNEDPEFFCHYVPSSSSRCTAWRCLPKCITKQSSATLKPRNSSSS 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23877706 23879666 - MELO3C002261.2.1 Cme12g01699 344916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01699 251 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01699 251 Pfam Protein tyrosine and serine/threonine kinase 5 200 IPR001245 GO:0004672|GO:0006468
Cme12g01699 251 CDD STKc_MAP3K-like 7 200 - -
Cme12g01699 251 PANTHER SERINE-THREONINE PROTEIN KINASE 5 223 - -
Cme12g01699 251 Gene3D Transferase(Phosphotransferase) domain 1 1 216 - -
Cme12g01699 251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
Cme12g01699 251 PRINTS Tyrosine kinase catalytic domain signature 24 37 IPR001245 GO:0004672|GO:0006468
Cme12g01699 251 PRINTS Tyrosine kinase catalytic domain signature 62 80 IPR001245 GO:0004672|GO:0006468
Cme12g01699 251 PRINTS Tyrosine kinase catalytic domain signature 108 118 IPR001245 GO:0004672|GO:0006468
Cme12g01699 251 PRINTS Tyrosine kinase catalytic domain signature 127 149 IPR001245 GO:0004672|GO:0006468
Cme12g01699 251 PRINTS Tyrosine kinase catalytic domain signature 171 193 IPR001245 GO:0004672|GO:0006468
Cme12g01699 251 SMART serkin_6 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01699 251 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 5 223 - -
Cme12g01699 251 PIRSF ILK 4 214 - -
Cme12g01699 251 SUPERFAMILY Protein kinase-like (PK-like) 4 200 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01341 Cme-Chr12:21400507 Cme12g01699 Cme-Chr12:23877706 3.06E-80 dispersed
Cme12g01699 Cme-Chr12:23877706 Cme06g02352 Cme-Chr6:30841256 1.13E-67 dispersed
Cme12g01699 Cme-Chr12:23877706 Cme08g00296 Cme-Chr8:1888947 2.56E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65344 PF07714 PK_Tyr_Ser-Thr 3.80E-56 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01699 - - cmo:103483488 524.628